These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.


BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

274 related articles for article (PubMed ID: 28231760)

  • 21. A Fast Approximate Algorithm for Mapping Long Reads to Large Reference Databases.
    Jain C; Dilthey A; Koren S; Aluru S; Phillippy AM
    J Comput Biol; 2018 Jul; 25(7):766-779. PubMed ID: 29708767
    [TBL] [Abstract][Full Text] [Related]  

  • 22. SRPRISM (Single Read Paired Read Indel Substitution Minimizer): an efficient aligner for assemblies with explicit guarantees.
    Morgulis A; Agarwala R
    Gigascience; 2020 Apr; 9(4):. PubMed ID: 32315028
    [TBL] [Abstract][Full Text] [Related]  

  • 23. Acceleration of short and long DNA read mapping without loss of accuracy using suffix array.
    Tárraga J; Arnau V; Martínez H; Moreno R; Cazorla D; Salavert-Torres J; Blanquer-Espert I; Dopazo J; Medina I
    Bioinformatics; 2014 Dec; 30(23):3396-8. PubMed ID: 25143289
    [TBL] [Abstract][Full Text] [Related]  

  • 24. AlignGraph2: similar genome-assisted reassembly pipeline for PacBio long reads.
    Huang S; He X; Wang G; Bao E
    Brief Bioinform; 2021 Sep; 22(5):. PubMed ID: 33621981
    [TBL] [Abstract][Full Text] [Related]  

  • 25. Arioc: GPU-accelerated alignment of short bisulfite-treated reads.
    Wilton R; Li X; Feinberg AP; Szalay AS
    Bioinformatics; 2018 Aug; 34(15):2673-2675. PubMed ID: 29554207
    [TBL] [Abstract][Full Text] [Related]  

  • 26. Short Sequence Aligner Benchmarking for Chromatin Research.
    Carter JL; Stevens H; Ridge PG; Johnson SM
    Int J Mol Sci; 2023 Sep; 24(18):. PubMed ID: 37762379
    [TBL] [Abstract][Full Text] [Related]  

  • 27. RandAL: a randomized approach to aligning DNA sequences to reference genomes.
    Vo NS; Tran Q; Niraula N; Phan V
    BMC Genomics; 2014; 15 Suppl 5(Suppl 5):S2. PubMed ID: 25081493
    [TBL] [Abstract][Full Text] [Related]  

  • 28. Magic-BLAST, an accurate RNA-seq aligner for long and short reads.
    Boratyn GM; Thierry-Mieg J; Thierry-Mieg D; Busby B; Madden TL
    BMC Bioinformatics; 2019 Jul; 20(1):405. PubMed ID: 31345161
    [TBL] [Abstract][Full Text] [Related]  

  • 29. HQAlign: aligning nanopore reads for SV detection using current-level modeling.
    Joshi D; Diggavi S; Chaisson MJP; Kannan S
    Bioinformatics; 2023 Oct; 39(10):. PubMed ID: 37738608
    [TBL] [Abstract][Full Text] [Related]  

  • 30. UNDR ROVER - a fast and accurate variant caller for targeted DNA sequencing.
    Park DJ; Li R; Lau E; Georgeson P; Nguyen-Dumont T; Pope BJ
    BMC Bioinformatics; 2016 Apr; 17():165. PubMed ID: 27083325
    [TBL] [Abstract][Full Text] [Related]  

  • 31. RASER: reads aligner for SNPs and editing sites of RNA.
    Ahn J; Xiao X
    Bioinformatics; 2015 Dec; 31(24):3906-13. PubMed ID: 26323713
    [TBL] [Abstract][Full Text] [Related]  

  • 32. RepLong: de novo repeat identification using long read sequencing data.
    Guo R; Li YR; He S; Ou-Yang L; Sun Y; Zhu Z
    Bioinformatics; 2018 Apr; 34(7):1099-1107. PubMed ID: 29126180
    [TBL] [Abstract][Full Text] [Related]  

  • 33. rNA: a fast and accurate short reads numerical aligner.
    Vezzi F; Del Fabbro C; Tomescu AI; Policriti A
    Bioinformatics; 2012 Jan; 28(1):123-4. PubMed ID: 22084252
    [TBL] [Abstract][Full Text] [Related]  

  • 34. CUSHAW3: sensitive and accurate base-space and color-space short-read alignment with hybrid seeding.
    Liu Y; Popp B; Schmidt B
    PLoS One; 2014; 9(1):e86869. PubMed ID: 24466273
    [TBL] [Abstract][Full Text] [Related]  

  • 35. Fast and accurate read alignment for resequencing.
    Mu JC; Jiang H; Kiani A; Mohiyuddin M; Bani Asadi N; Wong WH
    Bioinformatics; 2012 Sep; 28(18):2366-73. PubMed ID: 22811546
    [TBL] [Abstract][Full Text] [Related]  

  • 36. MinimapR: A parallel alignment tool for the analysis of large-scale third-generation sequencing data.
    Wang Z; Cui Y; Peng S; Liao X; Yu Y
    Comput Biol Chem; 2022 Aug; 99():107735. PubMed ID: 35850048
    [TBL] [Abstract][Full Text] [Related]  

  • 37. Concurrent and Accurate Short Read Mapping on Multicore Processors.
    Martínez H; Tárraga J; Medina I; Barrachina S; Castillo M; Dopazo J; Quintana-Ortí ES
    IEEE/ACM Trans Comput Biol Bioinform; 2015; 12(5):995-1007. PubMed ID: 26451814
    [TBL] [Abstract][Full Text] [Related]  

  • 38. Parallel and Scalable Short-Read Alignment on Multi-Core Clusters Using UPC+.
    González-Domínguez J; Liu Y; Schmidt B
    PLoS One; 2016; 11(1):e0145490. PubMed ID: 26731399
    [TBL] [Abstract][Full Text] [Related]  

  • 39. S-conLSH: alignment-free gapped mapping of noisy long reads.
    Chakraborty A; Morgenstern B; Bandyopadhyay S
    BMC Bioinformatics; 2021 Feb; 22(1):64. PubMed ID: 33573603
    [TBL] [Abstract][Full Text] [Related]  

  • 40. Fast read alignment with incorporation of known genomic variants.
    Guo H; Liu B; Guan D; Fu Y; Wang Y
    BMC Med Inform Decis Mak; 2019 Dec; 19(Suppl 6):265. PubMed ID: 31856811
    [TBL] [Abstract][Full Text] [Related]  

    [Previous]   [Next]    [New Search]
    of 14.