110 related articles for article (PubMed ID: 28236231)
1. Peptide Suboptimal Conformation Sampling for the Prediction of Protein-Peptide Interactions.
Lamiable A; Thévenet P; Eustache S; Saladin A; Moroy G; Tuffery P
Methods Mol Biol; 2017; 1561():21-34. PubMed ID: 28236231
[TBL] [Abstract][Full Text] [Related]
2. Information-Driven, Ensemble Flexible Peptide Docking Using HADDOCK.
Geng C; Narasimhan S; Rodrigues JP; Bonvin AM
Methods Mol Biol; 2017; 1561():109-138. PubMed ID: 28236236
[TBL] [Abstract][Full Text] [Related]
3. AnchorDock for Blind Flexible Docking of Peptides to Proteins.
Slutzki M; Ben-Shimon A; Niv MY
Methods Mol Biol; 2017; 1561():95-108. PubMed ID: 28236235
[TBL] [Abstract][Full Text] [Related]
4. Application of the ATTRACT Coarse-Grained Docking and Atomistic Refinement for Predicting Peptide-Protein Interactions.
Schindler C; Zacharias M
Methods Mol Biol; 2017; 1561():49-68. PubMed ID: 28236233
[TBL] [Abstract][Full Text] [Related]
5. Highly Flexible Protein-Peptide Docking Using CABS-Dock.
Ciemny MP; Kurcinski M; Kozak KJ; Kolinski A; Kmiecik S
Methods Mol Biol; 2017; 1561():69-94. PubMed ID: 28236234
[TBL] [Abstract][Full Text] [Related]
6. PEP-SiteFinder: a tool for the blind identification of peptide binding sites on protein surfaces.
Saladin A; Rey J; Thévenet P; Zacharias M; Moroy G; Tufféry P
Nucleic Acids Res; 2014 Jul; 42(Web Server issue):W221-6. PubMed ID: 24803671
[TBL] [Abstract][Full Text] [Related]
7. The Usage of ACCLUSTER for Peptide Binding Site Prediction.
Yan C; Xu X; Zou X
Methods Mol Biol; 2017; 1561():3-9. PubMed ID: 28236229
[TBL] [Abstract][Full Text] [Related]
8. Template-Based Prediction of Protein-Peptide Interactions by Using GalaxyPepDock.
Lee H; Seok C
Methods Mol Biol; 2017; 1561():37-47. PubMed ID: 28236232
[TBL] [Abstract][Full Text] [Related]
9. Modeling Peptide-Protein Structure and Binding Using Monte Carlo Sampling Approaches: Rosetta FlexPepDock and FlexPepBind.
Alam N; Schueler-Furman O
Methods Mol Biol; 2017; 1561():139-169. PubMed ID: 28236237
[TBL] [Abstract][Full Text] [Related]
10. Detection of Peptide-Binding Sites on Protein Surfaces Using the Peptimap Server.
Bohnuud T; Jones G; Schueler-Furman O; Kozakov D
Methods Mol Biol; 2017; 1561():11-20. PubMed ID: 28236230
[TBL] [Abstract][Full Text] [Related]
11. Fully Blind Peptide-Protein Docking with pepATTRACT.
Schindler CEM; de Vries SJ; Zacharias M
Structure; 2015 Aug; 23(8):1507-1515. PubMed ID: 26146186
[TBL] [Abstract][Full Text] [Related]
12. Investigating Protein-Peptide Interactions Using the Schrödinger Computational Suite.
Bhachoo J; Beuming T
Methods Mol Biol; 2017; 1561():235-254. PubMed ID: 28236242
[TBL] [Abstract][Full Text] [Related]
13. Hierarchical Flexible Peptide Docking by Conformer Generation and Ensemble Docking of Peptides.
Zhou P; Li B; Yan Y; Jin B; Wang L; Huang SY
J Chem Inf Model; 2018 Jun; 58(6):1292-1302. PubMed ID: 29738247
[TBL] [Abstract][Full Text] [Related]
14. Flexible docking of peptides to proteins using CABS-dock.
Kurcinski M; Badaczewska-Dawid A; Kolinski M; Kolinski A; Kmiecik S
Protein Sci; 2020 Jan; 29(1):211-222. PubMed ID: 31682301
[TBL] [Abstract][Full Text] [Related]
15. Modeling of protein-peptide interactions using the CABS-dock web server for binding site search and flexible docking.
Blaszczyk M; Kurcinski M; Kouza M; Wieteska L; Debinski A; Kolinski A; Kmiecik S
Methods; 2016 Jan; 93():72-83. PubMed ID: 26165956
[TBL] [Abstract][Full Text] [Related]
16. CABS-dock web server for the flexible docking of peptides to proteins without prior knowledge of the binding site.
Kurcinski M; Jamroz M; Blaszczyk M; Kolinski A; Kmiecik S
Nucleic Acids Res; 2015 Jul; 43(W1):W419-24. PubMed ID: 25943545
[TBL] [Abstract][Full Text] [Related]
17. Rosetta FlexPepDock ab-initio: simultaneous folding, docking and refinement of peptides onto their receptors.
Raveh B; London N; Zimmerman L; Schueler-Furman O
PLoS One; 2011 Apr; 6(4):e18934. PubMed ID: 21572516
[TBL] [Abstract][Full Text] [Related]
18. A protocol for CABS-dock protein-peptide docking driven by side-chain contact information.
Kurcinski M; Blaszczyk M; Ciemny MP; Kolinski A; Kmiecik S
Biomed Eng Online; 2017 Aug; 16(Suppl 1):73. PubMed ID: 28830545
[TBL] [Abstract][Full Text] [Related]
19. AnchorDock: Blind and Flexible Anchor-Driven Peptide Docking.
Ben-Shimon A; Niv MY
Structure; 2015 May; 23(5):929-940. PubMed ID: 25914054
[TBL] [Abstract][Full Text] [Related]
20. Modeling and Design of Peptidomimetics to Modulate Protein-Protein Interactions.
Watkins AM; Bonneau R; Arora PS
Methods Mol Biol; 2017; 1561():291-307. PubMed ID: 28236245
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]