150 related articles for article (PubMed ID: 28236232)
1. Template-Based Prediction of Protein-Peptide Interactions by Using GalaxyPepDock.
Lee H; Seok C
Methods Mol Biol; 2017; 1561():37-47. PubMed ID: 28236232
[TBL] [Abstract][Full Text] [Related]
2. Binding Site Prediction of Proteins with Organic Compounds or Peptides Using GALAXY Web Servers.
Heo L; Lee H; Baek M; Seok C
Methods Mol Biol; 2016; 1414():33-45. PubMed ID: 27094284
[TBL] [Abstract][Full Text] [Related]
3. GalaxyPepDock: a protein-peptide docking tool based on interaction similarity and energy optimization.
Lee H; Heo L; Lee MS; Seok C
Nucleic Acids Res; 2015 Jul; 43(W1):W431-5. PubMed ID: 25969449
[TBL] [Abstract][Full Text] [Related]
4. Structure prediction of biological assemblies using GALAXY in CAPRI rounds 38-45.
Park T; Woo H; Baek M; Yang J; Seok C
Proteins; 2020 Aug; 88(8):1009-1017. PubMed ID: 31774573
[TBL] [Abstract][Full Text] [Related]
5. The Usage of ACCLUSTER for Peptide Binding Site Prediction.
Yan C; Xu X; Zou X
Methods Mol Biol; 2017; 1561():3-9. PubMed ID: 28236229
[TBL] [Abstract][Full Text] [Related]
6. Highly Flexible Protein-Peptide Docking Using CABS-Dock.
Ciemny MP; Kurcinski M; Kozak KJ; Kolinski A; Kmiecik S
Methods Mol Biol; 2017; 1561():69-94. PubMed ID: 28236234
[TBL] [Abstract][Full Text] [Related]
7. Application of the ATTRACT Coarse-Grained Docking and Atomistic Refinement for Predicting Peptide-Protein Interactions.
Schindler C; Zacharias M
Methods Mol Biol; 2017; 1561():49-68. PubMed ID: 28236233
[TBL] [Abstract][Full Text] [Related]
8. Detection of Peptide-Binding Sites on Protein Surfaces Using the Peptimap Server.
Bohnuud T; Jones G; Schueler-Furman O; Kozakov D
Methods Mol Biol; 2017; 1561():11-20. PubMed ID: 28236230
[TBL] [Abstract][Full Text] [Related]
9. Peptide Suboptimal Conformation Sampling for the Prediction of Protein-Peptide Interactions.
Lamiable A; Thévenet P; Eustache S; Saladin A; Moroy G; Tuffery P
Methods Mol Biol; 2017; 1561():21-34. PubMed ID: 28236231
[TBL] [Abstract][Full Text] [Related]
10. Information-Driven, Ensemble Flexible Peptide Docking Using HADDOCK.
Geng C; Narasimhan S; Rodrigues JP; Bonvin AM
Methods Mol Biol; 2017; 1561():109-138. PubMed ID: 28236236
[TBL] [Abstract][Full Text] [Related]
11. Modeling Peptide-Protein Structure and Binding Using Monte Carlo Sampling Approaches: Rosetta FlexPepDock and FlexPepBind.
Alam N; Schueler-Furman O
Methods Mol Biol; 2017; 1561():139-169. PubMed ID: 28236237
[TBL] [Abstract][Full Text] [Related]
12. How to choose templates for modeling of protein complexes: Insights from benchmarking template-based docking.
Chakravarty D; McElfresh GW; Kundrotas PJ; Vakser IA
Proteins; 2020 Aug; 88(8):1070-1081. PubMed ID: 31994759
[TBL] [Abstract][Full Text] [Related]
13. AnchorDock for Blind Flexible Docking of Peptides to Proteins.
Slutzki M; Ben-Shimon A; Niv MY
Methods Mol Biol; 2017; 1561():95-108. PubMed ID: 28236235
[TBL] [Abstract][Full Text] [Related]
14. Template-based modeling and ab initio refinement of protein oligomer structures using GALAXY in CAPRI round 30.
Lee H; Baek M; Lee GR; Park S; Seok C
Proteins; 2017 Mar; 85(3):399-407. PubMed ID: 27770545
[TBL] [Abstract][Full Text] [Related]
15. RNA 3D Structure Modeling by Combination of Template-Based Method ModeRNA, Template-Free Folding with SimRNA, and Refinement with QRNAS.
Piatkowski P; Kasprzak JM; Kumar D; Magnus M; Chojnowski G; Bujnicki JM
Methods Mol Biol; 2016; 1490():217-35. PubMed ID: 27665602
[TBL] [Abstract][Full Text] [Related]
16. Modeling of protein-peptide interactions using the CABS-dock web server for binding site search and flexible docking.
Blaszczyk M; Kurcinski M; Kouza M; Wieteska L; Debinski A; Kolinski A; Kmiecik S
Methods; 2016 Jan; 93():72-83. PubMed ID: 26165956
[TBL] [Abstract][Full Text] [Related]
17. DOCK/PIERR: web server for structure prediction of protein-protein complexes.
Viswanath S; Ravikant DV; Elber R
Methods Mol Biol; 2014; 1137():199-207. PubMed ID: 24573483
[TBL] [Abstract][Full Text] [Related]
18. ClusPro in rounds 38 to 45 of CAPRI: Toward combining template-based methods with free docking.
Padhorny D; Porter KA; Ignatov M; Alekseenko A; Beglov D; Kotelnikov S; Ashizawa R; Desta I; Alam N; Sun Z; Brini E; Dill K; Schueler-Furman O; Vajda S; Kozakov D
Proteins; 2020 Aug; 88(8):1082-1090. PubMed ID: 32142178
[TBL] [Abstract][Full Text] [Related]
19. Template based protein structure modeling by global optimization in CASP11.
Joo K; Joung I; Lee SY; Kim JY; Cheng Q; Manavalan B; Joung JY; Heo S; Lee J; Nam M; Lee IH; Lee SJ; Lee J
Proteins; 2016 Sep; 84 Suppl 1():221-32. PubMed ID: 26329522
[TBL] [Abstract][Full Text] [Related]
20. Global and local structural similarity in protein-protein complexes: implications for template-based docking.
Kundrotas PJ; Vakser IA
Proteins; 2013 Dec; 81(12):2137-42. PubMed ID: 23946125
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]