These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.
4. Analyzing and Designing Cell Factories with OptFlux. Vilaça P; Maia P; Giesteira H; Rocha I; Rocha M Methods Mol Biol; 2018; 1716():37-76. PubMed ID: 29222748 [TBL] [Abstract][Full Text] [Related]
5. Use of CellNetAnalyzer in biotechnology and metabolic engineering. von Kamp A; Thiele S; Hädicke O; Klamt S J Biotechnol; 2017 Nov; 261():221-228. PubMed ID: 28499817 [TBL] [Abstract][Full Text] [Related]
6. Enumeration of smallest intervention strategies in genome-scale metabolic networks. von Kamp A; Klamt S PLoS Comput Biol; 2014 Jan; 10(1):e1003378. PubMed ID: 24391481 [TBL] [Abstract][Full Text] [Related]
7. A computational tool for the simulation and optimization of microbial strains accounting integrated metabolic/regulatory information. Vilaça P; Rocha I; Rocha M Biosystems; 2011 Mar; 103(3):435-41. PubMed ID: 21144882 [TBL] [Abstract][Full Text] [Related]
8. Evolutionary programming as a platform for in silico metabolic engineering. Patil KR; Rocha I; Förster J; Nielsen J BMC Bioinformatics; 2005 Dec; 6():308. PubMed ID: 16375763 [TBL] [Abstract][Full Text] [Related]
9. In silico strain optimization by adding reactions to metabolic models. Correia S; Rocha M J Integr Bioinform; 2012 Jul; 9(3):202. PubMed ID: 22829573 [TBL] [Abstract][Full Text] [Related]
10. Comparing methods for metabolic network analysis and an application to metabolic engineering. Tomar N; De RK Gene; 2013 May; 521(1):1-14. PubMed ID: 23537990 [TBL] [Abstract][Full Text] [Related]
11. Development and application of efficient pathway enumeration algorithms for metabolic engineering applications. Liu F; Vilaça P; Rocha I; Rocha M Comput Methods Programs Biomed; 2015 Feb; 118(2):134-46. PubMed ID: 25580014 [TBL] [Abstract][Full Text] [Related]
16. IMGMD: A platform for the integration and standardisation of In silico Microbial Genome-scale Metabolic Models. Ye C; Xu N; Dong C; Ye Y; Zou X; Chen X; Guo F; Liu L Sci Rep; 2017 Apr; 7(1):727. PubMed ID: 28389638 [TBL] [Abstract][Full Text] [Related]
17. Elementary mode analysis: a useful metabolic pathway analysis tool for reprograming microbial metabolic pathways. Trinh CT; Thompson RA Subcell Biochem; 2012; 64():21-42. PubMed ID: 23080244 [TBL] [Abstract][Full Text] [Related]
18. Flux analysis and metabolomics for systematic metabolic engineering of microorganisms. Toya Y; Shimizu H Biotechnol Adv; 2013 Nov; 31(6):818-26. PubMed ID: 23680193 [TBL] [Abstract][Full Text] [Related]
19. Elementary flux modes in a nutshell: properties, calculation and applications. Zanghellini J; Ruckerbauer DE; Hanscho M; Jungreuthmayer C Biotechnol J; 2013 Sep; 8(9):1009-16. PubMed ID: 23788432 [TBL] [Abstract][Full Text] [Related]
20. TNA4OptFlux--a software tool for the analysis of strain optimization strategies. Pinto JP; Pereira R; Cardoso J; Rocha I; Rocha M BMC Res Notes; 2013 May; 6():175. PubMed ID: 23641878 [TBL] [Abstract][Full Text] [Related] [Next] [New Search]