These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.


BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

219 related articles for article (PubMed ID: 28241729)

  • 1. Extension of the Highly Mobile Membrane Mimetic to Transmembrane Systems through Customized in Silico Solvents.
    Vermaas JV; Pogorelov TV; Tajkhorshid E
    J Phys Chem B; 2017 Apr; 121(15):3764-3776. PubMed ID: 28241729
    [TBL] [Abstract][Full Text] [Related]  

  • 2. Improved Highly Mobile Membrane Mimetic Model for Investigating Protein-Cholesterol Interactions.
    Lihan M; Tajkhorshid E
    J Chem Inf Model; 2024 Jun; 64(12):4822-4834. PubMed ID: 38844760
    [TBL] [Abstract][Full Text] [Related]  

  • 3. Accelerating membrane insertion of peripheral proteins with a novel membrane mimetic model.
    Ohkubo YZ; Pogorelov TV; Arcario MJ; Christensen GA; Tajkhorshid E
    Biophys J; 2012 May; 102(9):2130-9. PubMed ID: 22824277
    [TBL] [Abstract][Full Text] [Related]  

  • 4. CHARMM-GUI HMMM Builder for Membrane Simulations with the Highly Mobile Membrane-Mimetic Model.
    Qi Y; Cheng X; Lee J; Vermaas JV; Pogorelov TV; Tajkhorshid E; Park S; Klauda JB; Im W
    Biophys J; 2015 Nov; 109(10):2012-22. PubMed ID: 26588561
    [TBL] [Abstract][Full Text] [Related]  

  • 5. Partitioning of amino acids into a model membrane: capturing the interface.
    Pogorelov TV; Vermaas JV; Arcario MJ; Tajkhorshid E
    J Phys Chem B; 2014 Feb; 118(6):1481-92. PubMed ID: 24451004
    [TBL] [Abstract][Full Text] [Related]  

  • 6. Efficient Exploration of Membrane-Associated Phenomena at Atomic Resolution.
    Vermaas JV; Baylon JL; Arcario MJ; Muller MP; Wu Z; Pogorelov TV; Tajkhorshid E
    J Membr Biol; 2015 Jun; 248(3):563-82. PubMed ID: 25998378
    [TBL] [Abstract][Full Text] [Related]  

  • 7. Anisotropic solvent model of the lipid bilayer. 2. Energetics of insertion of small molecules, peptides, and proteins in membranes.
    Lomize AL; Pogozheva ID; Mosberg HI
    J Chem Inf Model; 2011 Apr; 51(4):930-46. PubMed ID: 21438606
    [TBL] [Abstract][Full Text] [Related]  

  • 8. Atomic-level description of protein-lipid interactions using an accelerated membrane model.
    Baylon JL; Vermaas JV; Muller MP; Arcario MJ; Pogorelov TV; Tajkhorshid E
    Biochim Biophys Acta; 2016 Jul; 1858(7 Pt B):1573-83. PubMed ID: 26940626
    [TBL] [Abstract][Full Text] [Related]  

  • 9. Setting Up All-Atom Molecular Dynamics Simulations to Study the Interactions of Peripheral Membrane Proteins with Model Lipid Bilayers.
    Monje-Galvan V; Warburton L; Klauda JB
    Methods Mol Biol; 2019; 1949():325-339. PubMed ID: 30790265
    [TBL] [Abstract][Full Text] [Related]  

  • 10. A comparative study on the ability of two implicit solvent lipid models to predict transmembrane helix tilt angles.
    Frank A; Andricioaei I
    J Membr Biol; 2011 Jan; 239(1-2):57-62. PubMed ID: 21152910
    [TBL] [Abstract][Full Text] [Related]  

  • 11. Modeling lipid-protein interactions for coarse-grained lipid and Cα protein models.
    Ugarte La Torre D; Takada S
    J Chem Phys; 2021 Oct; 155(15):155101. PubMed ID: 34686048
    [TBL] [Abstract][Full Text] [Related]  

  • 12. A microscopic view of phospholipid insertion into biological membranes.
    Vermaas JV; Tajkhorshid E
    J Phys Chem B; 2014 Feb; 118(7):1754-64. PubMed ID: 24313792
    [TBL] [Abstract][Full Text] [Related]  

  • 13. Solvation of transmembrane proteins by isotropic membrane mimetics: a molecular dynamics study.
    Mottamal M; Shen S; Guembe C; Krilov G
    J Phys Chem B; 2007 Sep; 111(38):11285-96. PubMed ID: 17784746
    [TBL] [Abstract][Full Text] [Related]  

  • 14. The importance of membrane defects-lessons from simulations.
    Bennett WF; Tieleman DP
    Acc Chem Res; 2014 Aug; 47(8):2244-51. PubMed ID: 24892900
    [TBL] [Abstract][Full Text] [Related]  

  • 15. Critical Comparison of Biomembrane Force Fields: Protein-Lipid Interactions at the Membrane Interface.
    Sandoval-Perez A; Pluhackova K; Böckmann RA
    J Chem Theory Comput; 2017 May; 13(5):2310-2321. PubMed ID: 28388089
    [TBL] [Abstract][Full Text] [Related]  

  • 16. Membrane transporter dimerization driven by differential lipid solvation energetics of dissociated and associated states.
    Chadda R; Bernhardt N; Kelley EG; Teixeira SC; Griffith K; Gil-Ley A; Öztürk TN; Hughes LE; Forsythe A; Krishnamani V; Faraldo-Gómez JD; Robertson JL
    Elife; 2021 Apr; 10():. PubMed ID: 33825681
    [TBL] [Abstract][Full Text] [Related]  

  • 17. Molecular dynamics simulation of the evolution of hydrophobic defects in one monolayer of a phosphatidylcholine bilayer: relevance for membrane fusion mechanisms.
    Tieleman DP; Bentz J
    Biophys J; 2002 Sep; 83(3):1501-10. PubMed ID: 12202375
    [TBL] [Abstract][Full Text] [Related]  

  • 18. Conical lipids in flat bilayers induce packing defects similar to that induced by positive curvature.
    Vamparys L; Gautier R; Vanni S; Bennett WF; Tieleman DP; Antonny B; Etchebest C; Fuchs PF
    Biophys J; 2013 Feb; 104(3):585-93. PubMed ID: 23442909
    [TBL] [Abstract][Full Text] [Related]  

  • 19. Coarse-grain model for lipid bilayer self-assembly and dynamics: multiparticle collision description of the solvent.
    Huang MJ; Kapral R; Mikhailov AS; Chen HY
    J Chem Phys; 2012 Aug; 137(5):055101. PubMed ID: 22894383
    [TBL] [Abstract][Full Text] [Related]  

  • 20. Molecular simulations of lipid flip-flop in the presence of model transmembrane helices.
    Sapay N; Bennett WF; Tieleman DP
    Biochemistry; 2010 Sep; 49(35):7665-73. PubMed ID: 20666375
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 11.