125 related articles for article (PubMed ID: 28259144)
1. SAG-QC: quality control of single amplified genome information by subtracting non-target sequences based on sequence compositions.
Maruyama T; Mori T; Yamagishi K; Takeyama H
BMC Bioinformatics; 2017 Mar; 18(1):152. PubMed ID: 28259144
[TBL] [Abstract][Full Text] [Related]
2. Strain-level profiling of viable microbial community by selective single-cell genome sequencing.
Hosokawa M; Endoh T; Kamata K; Arikawa K; Nishikawa Y; Kogawa M; Saeki T; Yoda T; Takeyama H
Sci Rep; 2022 Mar; 12(1):4443. PubMed ID: 35292746
[TBL] [Abstract][Full Text] [Related]
3. Monodisperse Picoliter Droplets for Low-Bias and Contamination-Free Reactions in Single-Cell Whole Genome Amplification.
Nishikawa Y; Hosokawa M; Maruyama T; Yamagishi K; Mori T; Takeyama H
PLoS One; 2015; 10(9):e0138733. PubMed ID: 26389587
[TBL] [Abstract][Full Text] [Related]
4. Evaluation of single-cell genomics to address evolutionary questions using three SAGs of the choanoflagellate Monosiga brevicollis.
López-Escardó D; Grau-Bové X; Guillaumet-Adkins A; Gut M; Sieracki ME; Ruiz-Trillo I
Sci Rep; 2017 Sep; 7(1):11025. PubMed ID: 28887541
[TBL] [Abstract][Full Text] [Related]
5. NGS-QC Generator: A Quality Control System for ChIP-Seq and Related Deep Sequencing-Generated Datasets.
Mendoza-Parra MA; Saleem MA; Blum M; Cholley PE; Gronemeyer H
Methods Mol Biol; 2016; 1418():243-65. PubMed ID: 27008019
[TBL] [Abstract][Full Text] [Related]
6. Neptune: a bioinformatics tool for rapid discovery of genomic variation in bacterial populations.
Marinier E; Zaheer R; Berry C; Weedmark KA; Domaratzki M; Mabon P; Knox NC; Reimer AR; Graham MR; Chui L; Patterson-Fortin L; Zhang J; Pagotto F; Farber J; Mahony J; Seyer K; Bekal S; Tremblay C; Isaac-Renton J; Prystajecky N; Chen J; Slade P; Van Domselaar G
Nucleic Acids Res; 2017 Oct; 45(18):e159. PubMed ID: 29048594
[TBL] [Abstract][Full Text] [Related]
7. Obtaining high-quality draft genomes from uncultured microbes by cleaning and co-assembly of single-cell amplified genomes.
Kogawa M; Hosokawa M; Nishikawa Y; Mori K; Takeyama H
Sci Rep; 2018 Feb; 8(1):2059. PubMed ID: 29391438
[TBL] [Abstract][Full Text] [Related]
8. MeCorS: Metagenome-enabled error correction of single cell sequencing reads.
Bremges A; Singer E; Woyke T; Sczyrba A
Bioinformatics; 2016 Jul; 32(14):2199-201. PubMed ID: 27153586
[TBL] [Abstract][Full Text] [Related]
9. GeneViTo: visualizing gene-product functional and structural features in genomic datasets.
Vernikos GS; Gkogkas CG; Promponas VJ; Hamodrakas SJ
BMC Bioinformatics; 2003 Oct; 4():53. PubMed ID: 14594459
[TBL] [Abstract][Full Text] [Related]
10. Phylogenomic analysis of bacterial and archaeal sequences with AMPHORA2.
Wu M; Scott AJ
Bioinformatics; 2012 Apr; 28(7):1033-4. PubMed ID: 22332237
[TBL] [Abstract][Full Text] [Related]
11. Ten years of bacterial genome sequencing: comparative-genomics-based discoveries.
Binnewies TT; Motro Y; Hallin PF; Lund O; Dunn D; La T; Hampson DJ; Bellgard M; Wassenaar TM; Ussery DW
Funct Integr Genomics; 2006 Jul; 6(3):165-85. PubMed ID: 16773396
[TBL] [Abstract][Full Text] [Related]
12.
Chen T; Siddiqui H; Olsen I
Front Cell Infect Microbiol; 2017; 7():28. PubMed ID: 28261563
[TBL] [Abstract][Full Text] [Related]
13. Bioinformatics software for biologists in the genomics era.
Kumar S; Dudley J
Bioinformatics; 2007 Jul; 23(14):1713-7. PubMed ID: 17485425
[TBL] [Abstract][Full Text] [Related]
14. Gene fusions and gene duplications: relevance to genomic annotation and functional analysis.
Serres MH; Riley M
BMC Genomics; 2005 Mar; 6():33. PubMed ID: 15757509
[TBL] [Abstract][Full Text] [Related]
15. IonGAP: integrative bacterial genome analysis for Ion Torrent sequence data.
Baez-Ortega A; Lorenzo-Diaz F; Hernandez M; Gonzalez-Vila CI; Roda-Garcia JL; Colebrook M; Flores C
Bioinformatics; 2015 Sep; 31(17):2870-3. PubMed ID: 25953799
[TBL] [Abstract][Full Text] [Related]
16. Complete Sequence Construction of the Highly Repetitive Ribosomal RNA Gene Repeats in Eukaryotes Using Whole Genome Sequence Data.
Agrawal S; Ganley AR
Methods Mol Biol; 2016; 1455():161-81. PubMed ID: 27576718
[TBL] [Abstract][Full Text] [Related]
17. Survey of clustered regularly interspaced short palindromic repeats and their associated Cas proteins (CRISPR/Cas) systems in multiple sequenced strains of Klebsiella pneumoniae.
Ostria-Hernández ML; Sánchez-Vallejo CJ; Ibarra JA; Castro-Escarpulli G
BMC Res Notes; 2015 Aug; 8():332. PubMed ID: 26238567
[TBL] [Abstract][Full Text] [Related]
18. A new method to compute K-mer frequencies and its application to annotate large repetitive plant genomes.
Kurtz S; Narechania A; Stein JC; Ware D
BMC Genomics; 2008 Oct; 9():517. PubMed ID: 18976482
[TBL] [Abstract][Full Text] [Related]
19. Decontamination of 16S rRNA gene amplicon sequence datasets based on bacterial load assessment by qPCR.
Lazarevic V; Gaïa N; Girard M; Schrenzel J
BMC Microbiol; 2016 Apr; 16():73. PubMed ID: 27107811
[TBL] [Abstract][Full Text] [Related]
20. T-iDT : tool for identification of drug target in bacteria and validation by Mycobacterium tuberculosis.
Singh NK; Selvam SM; Chakravarthy P
In Silico Biol; 2006; 6(6):485-93. PubMed ID: 17518759
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]