These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.
30. Multiplexed Single Cell mRNA Sequencing Analysis of Mouse Embryonic Cells. Feng W; Przysinda A; Li G J Vis Exp; 2020 Jan; (155):. PubMed ID: 31984954 [TBL] [Abstract][Full Text] [Related]
31. Scaling up single-cell RNA-seq data analysis with CellBridge workflow. Nouri N; Kurlovs AH; Gaglia G; de Rinaldis E; Savova V Bioinformatics; 2023 Dec; 39(12):. PubMed ID: 38113416 [TBL] [Abstract][Full Text] [Related]
32. Identification of cell barcodes from long-read single-cell RNA-seq with BLAZE. You Y; Prawer YDJ; De Paoli-Iseppi R; Hunt CPJ; Parish CL; Shim H; Clark MB Genome Biol; 2023 Apr; 24(1):66. PubMed ID: 37024980 [TBL] [Abstract][Full Text] [Related]
33. Falco: a quick and flexible single-cell RNA-seq processing framework on the cloud. Yang A; Troup M; Lin P; Ho JW Bioinformatics; 2017 Mar; 33(5):767-769. PubMed ID: 28025200 [TBL] [Abstract][Full Text] [Related]
34. Data Analysis in Single-Cell Transcriptome Sequencing. Gao S Methods Mol Biol; 2018; 1754():311-326. PubMed ID: 29536451 [TBL] [Abstract][Full Text] [Related]
35. CaSTLe - Classification of single cells by transfer learning: Harnessing the power of publicly available single cell RNA sequencing experiments to annotate new experiments. Lieberman Y; Rokach L; Shay T PLoS One; 2018; 13(10):e0205499. PubMed ID: 30304022 [TBL] [Abstract][Full Text] [Related]
36. Fast interpolation-based t-SNE for improved visualization of single-cell RNA-seq data. Linderman GC; Rachh M; Hoskins JG; Steinerberger S; Kluger Y Nat Methods; 2019 Mar; 16(3):243-245. PubMed ID: 30742040 [TBL] [Abstract][Full Text] [Related]
37. Exploiting single-cell expression to characterize co-expression replicability. Crow M; Paul A; Ballouz S; Huang ZJ; Gillis J Genome Biol; 2016 May; 17():101. PubMed ID: 27165153 [TBL] [Abstract][Full Text] [Related]
38. scBGEDA: deep single-cell clustering analysis via a dual denoising autoencoder with bipartite graph ensemble clustering. Wang Y; Yu Z; Li S; Bian C; Liang Y; Wong KC; Li X Bioinformatics; 2023 Feb; 39(2):. PubMed ID: 36734596 [TBL] [Abstract][Full Text] [Related]
39. scPADGRN: A preconditioned ADMM approach for reconstructing dynamic gene regulatory network using single-cell RNA sequencing data. Zheng X; Huang Y; Zou X PLoS Comput Biol; 2020 Jul; 16(7):e1007471. PubMed ID: 32716923 [TBL] [Abstract][Full Text] [Related]