722 related articles for article (PubMed ID: 28273065)
1. Complex multi-enhancer contacts captured by genome architecture mapping.
Beagrie RA; Scialdone A; Schueler M; Kraemer DC; Chotalia M; Xie SQ; Barbieri M; de Santiago I; Lavitas LM; Branco MR; Fraser J; Dostie J; Game L; Dillon N; Edwards PA; Nicodemi M; Pombo A
Nature; 2017 Mar; 543(7646):519-524. PubMed ID: 28273065
[TBL] [Abstract][Full Text] [Related]
2. Multiplex-GAM: genome-wide identification of chromatin contacts yields insights overlooked by Hi-C.
Beagrie RA; Thieme CJ; Annunziatella C; Baugher C; Zhang Y; Schueler M; Kukalev A; Kempfer R; Chiariello AM; Bianco S; Li Y; Davis T; Scialdone A; Welch LR; Nicodemi M; Pombo A
Nat Methods; 2023 Jul; 20(7):1037-1047. PubMed ID: 37336949
[TBL] [Abstract][Full Text] [Related]
3. Chromatin connectivity maps reveal dynamic promoter-enhancer long-range associations.
Zhang Y; Wong CH; Birnbaum RY; Li G; Favaro R; Ngan CY; Lim J; Tai E; Poh HM; Wong E; Mulawadi FH; Sung WK; Nicolis S; Ahituv N; Ruan Y; Wei CL
Nature; 2013 Dec; 504(7479):306-310. PubMed ID: 24213634
[TBL] [Abstract][Full Text] [Related]
4. Contribution of transposable elements and distal enhancers to evolution of human-specific features of interphase chromatin architecture in embryonic stem cells.
Glinsky GV
Chromosome Res; 2018 Mar; 26(1-2):61-84. PubMed ID: 29335803
[TBL] [Abstract][Full Text] [Related]
5. Dynamics of the 4D genome during in vivo lineage specification and differentiation.
Oudelaar AM; Beagrie RA; Gosden M; de Ornellas S; Georgiades E; Kerry J; Hidalgo D; Carrelha J; Shivalingam A; El-Sagheer AH; Telenius JM; Brown T; Buckle VJ; Socolovsky M; Higgs DR; Hughes JR
Nat Commun; 2020 Jun; 11(1):2722. PubMed ID: 32483172
[TBL] [Abstract][Full Text] [Related]
6. Cell-type specialization is encoded by specific chromatin topologies.
Winick-Ng W; Kukalev A; Harabula I; Zea-Redondo L; Szabó D; Meijer M; Serebreni L; Zhang Y; Bianco S; Chiariello AM; Irastorza-Azcarate I; Thieme CJ; Sparks TM; Carvalho S; Fiorillo L; Musella F; Irani E; Torlai Triglia E; Kolodziejczyk AA; Abentung A; Apostolova G; Paul EJ; Franke V; Kempfer R; Akalin A; Teichmann SA; Dechant G; Ungless MA; Nicodemi M; Welch L; Castelo-Branco G; Pombo A
Nature; 2021 Nov; 599(7886):684-691. PubMed ID: 34789882
[TBL] [Abstract][Full Text] [Related]
7. Mapping of long-range chromatin interactions by proximity ligation-assisted ChIP-seq.
Fang R; Yu M; Li G; Chee S; Liu T; Schmitt AD; Ren B
Cell Res; 2016 Dec; 26(12):1345-1348. PubMed ID: 27886167
[No Abstract] [Full Text] [Related]
8. Genomic profiling of DNA methyltransferases reveals a role for DNMT3B in genic methylation.
Baubec T; Colombo DF; Wirbelauer C; Schmidt J; Burger L; Krebs AR; Akalin A; Schübeler D
Nature; 2015 Apr; 520(7546):243-7. PubMed ID: 25607372
[TBL] [Abstract][Full Text] [Related]
9. Enhancers and super-enhancers have an equivalent regulatory role in embryonic stem cells through regulation of single or multiple genes.
Moorthy SD; Davidson S; Shchuka VM; Singh G; Malek-Gilani N; Langroudi L; Martchenko A; So V; Macpherson NN; Mitchell JA
Genome Res; 2017 Feb; 27(2):246-258. PubMed ID: 27895109
[TBL] [Abstract][Full Text] [Related]
10. Long-range enhancer-promoter contacts in gene expression control.
Schoenfelder S; Fraser P
Nat Rev Genet; 2019 Aug; 20(8):437-455. PubMed ID: 31086298
[TBL] [Abstract][Full Text] [Related]
11. Divergent wiring of repressive and active chromatin interactions between mouse embryonic and trophoblast lineages.
Schoenfelder S; Mifsud B; Senner CE; Todd CD; Chrysanthou S; Darbo E; Hemberger M; Branco MR
Nat Commun; 2018 Oct; 9(1):4189. PubMed ID: 30305613
[TBL] [Abstract][Full Text] [Related]
12. Enhancer identification in mouse embryonic stem cells using integrative modeling of chromatin and genomic features.
Chen CY; Morris Q; Mitchell JA
BMC Genomics; 2012 Apr; 13():152. PubMed ID: 22537144
[TBL] [Abstract][Full Text] [Related]
13. Nuclear compartments, genome folding, and enhancer-promoter communication.
Ulianov SV; Gavrilov AA; Razin SV
Int Rev Cell Mol Biol; 2015; 315():183-244. PubMed ID: 25708464
[TBL] [Abstract][Full Text] [Related]
14. Identification of Transcribed Enhancers by Genome-Wide Chromatin Immunoprecipitation Sequencing.
Blinka S; Reimer MH; Pulakanti K; Pinello L; Yuan GC; Rao S
Methods Mol Biol; 2017; 1468():91-109. PubMed ID: 27662872
[TBL] [Abstract][Full Text] [Related]
15. 5C analysis of the Epidermal Differentiation Complex locus reveals distinct chromatin interaction networks between gene-rich and gene-poor TADs in skin epithelial cells.
Poterlowicz K; Yarker JL; Malashchuk I; Lajoie BR; Mardaryev AN; Gdula MR; Sharov AA; Kohwi-Shigematsu T; Botchkarev VA; Fessing MY
PLoS Genet; 2017 Sep; 13(9):e1006966. PubMed ID: 28863138
[TBL] [Abstract][Full Text] [Related]
16. A unique chromatin signature uncovers early developmental enhancers in humans.
Rada-Iglesias A; Bajpai R; Swigut T; Brugmann SA; Flynn RA; Wysocka J
Nature; 2011 Feb; 470(7333):279-83. PubMed ID: 21160473
[TBL] [Abstract][Full Text] [Related]
17. Super enhancers-Functional cores under the 3D genome.
Zhang J; Yue W; Zhou Y; Liao M; Chen X; Hua J
Cell Prolif; 2021 Feb; 54(2):e12970. PubMed ID: 33336467
[TBL] [Abstract][Full Text] [Related]
18. Principles of nucleosome organization revealed by single-cell micrococcal nuclease sequencing.
Lai B; Gao W; Cui K; Xie W; Tang Q; Jin W; Hu G; Ni B; Zhao K
Nature; 2018 Oct; 562(7726):281-285. PubMed ID: 30258225
[TBL] [Abstract][Full Text] [Related]
19. Statistical confidence estimation for Hi-C data reveals regulatory chromatin contacts.
Ay F; Bailey TL; Noble WS
Genome Res; 2014 Jun; 24(6):999-1011. PubMed ID: 24501021
[TBL] [Abstract][Full Text] [Related]
20. Clock-dependent chromatin topology modulates circadian transcription and behavior.
Mermet J; Yeung J; Hurni C; Mauvoisin D; Gustafson K; Jouffe C; Nicolas D; Emmenegger Y; Gobet C; Franken P; Gachon F; Naef F
Genes Dev; 2018 Mar; 32(5-6):347-358. PubMed ID: 29572261
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]