These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.


BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

96 related articles for article (PubMed ID: 28274174)

  • 1. Samira-VP: A simple protein alignment method with rechecking the alphabet vector positions.
    Fotoohifiroozabadi S; Mohamad MS; Deris S
    J Bioinform Comput Biol; 2017 Apr; 15(2):1750004. PubMed ID: 28274174
    [TBL] [Abstract][Full Text] [Related]  

  • 2. NAHAL-Flex: A Numerical and Alphabetical Hinge Detection Algorithm for Flexible Protein Structure Alignment.
    Fotoohifiroozabadi S; Mohamad MS; Deris S
    IEEE/ACM Trans Comput Biol Bioinform; 2018; 15(3):934-943. PubMed ID: 28534783
    [TBL] [Abstract][Full Text] [Related]  

  • 3. A context evaluation approach for structural comparison of proteins using cross entropy over n-gram modelling.
    Razmara J; Deris SB; Parvizpour S
    Comput Biol Med; 2013 Oct; 43(10):1614-21. PubMed ID: 24034753
    [TBL] [Abstract][Full Text] [Related]  

  • 4. Using Variable-Length Aligned Fragment Pairs and an Improved Transition Function for Flexible Protein Structure Alignment.
    Cao H; Lu Y
    J Comput Biol; 2017 Jan; 24(1):2-12. PubMed ID: 27710035
    [TBL] [Abstract][Full Text] [Related]  

  • 5. Protein structure mining using a structural alphabet.
    Tyagi M; de Brevern AG; Srinivasan N; Offmann B
    Proteins; 2008 May; 71(2):920-37. PubMed ID: 18004784
    [TBL] [Abstract][Full Text] [Related]  

  • 6. Structural Class Classification of 3D Protein Structure Based on Multi-View 2D Images.
    Suryanto CH; Saigo H; Fukui K
    IEEE/ACM Trans Comput Biol Bioinform; 2018; 15(1):286-299. PubMed ID: 28113600
    [TBL] [Abstract][Full Text] [Related]  

  • 7. CAB-Align: A Flexible Protein Structure Alignment Method Based on the Residue-Residue Contact Area.
    Terashi G; Takeda-Shitaka M
    PLoS One; 2015; 10(10):e0141440. PubMed ID: 26502070
    [TBL] [Abstract][Full Text] [Related]  

  • 8. A spectral approach to protein structure alignment.
    Shibberu Y; Holder A
    IEEE/ACM Trans Comput Biol Bioinform; 2011; 8(4):867-75. PubMed ID: 21301031
    [TBL] [Abstract][Full Text] [Related]  

  • 9. Evaluation of methods for predicting the topology of beta-barrel outer membrane proteins and a consensus prediction method.
    Bagos PG; Liakopoulos TD; Hamodrakas SJ
    BMC Bioinformatics; 2005 Jan; 6():7. PubMed ID: 15647112
    [TBL] [Abstract][Full Text] [Related]  

  • 10. The influence of gapped positions in multiple sequence alignments on secondary structure prediction methods.
    Simossis VA; Heringa J
    Comput Biol Chem; 2004 Dec; 28(5-6):351-66. PubMed ID: 15556476
    [TBL] [Abstract][Full Text] [Related]  

  • 11. Three-dimensional shape-structure comparison method for protein classification.
    Daras P; Zarpalas D; Axenopoulos A; Tzovaras D; Strintzis MG
    IEEE/ACM Trans Comput Biol Bioinform; 2006; 3(3):193-207. PubMed ID: 17048458
    [TBL] [Abstract][Full Text] [Related]  

  • 12. Connectivity independent protein-structure alignment: a hierarchical approach.
    Kolbeck B; May P; Schmidt-Goenner T; Steinke T; Knapp EW
    BMC Bioinformatics; 2006 Nov; 7():510. PubMed ID: 17118190
    [TBL] [Abstract][Full Text] [Related]  

  • 13. Analysis of conservation and substitutions of secondary structure elements within protein superfamilies.
    Mizuguchi K; Blundell T
    Bioinformatics; 2000 Dec; 16(12):1111-9. PubMed ID: 11159330
    [TBL] [Abstract][Full Text] [Related]  

  • 14. Progressive structure-based alignment of homologous proteins: Adopting sequence comparison strategies.
    Joseph AP; Srinivasan N; de Brevern AG
    Biochimie; 2012 Sep; 94(9):2025-34. PubMed ID: 22676903
    [TBL] [Abstract][Full Text] [Related]  

  • 15. Prediction of beta-turns at over 80% accuracy based on an ensemble of predicted secondary structures and multiple alignments.
    Zheng C; Kurgan L
    BMC Bioinformatics; 2008 Oct; 9():430. PubMed ID: 18847492
    [TBL] [Abstract][Full Text] [Related]  

  • 16. Protein fold recognition by prediction-based threading.
    Rost B; Schneider R; Sander C
    J Mol Biol; 1997 Jul; 270(3):471-80. PubMed ID: 9237912
    [TBL] [Abstract][Full Text] [Related]  

  • 17. Angle-distance image matching techniques for protein structure comparison.
    Chu CH; Tang CY; Tang CY; Pai TW
    J Mol Recognit; 2008; 21(6):442-52. PubMed ID: 18729044
    [TBL] [Abstract][Full Text] [Related]  

  • 18. Improvement of protein structure comparison using a structural alphabet.
    Joseph AP; Srinivasan N; de Brevern AG
    Biochimie; 2011 Sep; 93(9):1434-45. PubMed ID: 21569819
    [TBL] [Abstract][Full Text] [Related]  

  • 19. mulPBA: an efficient multiple protein structure alignment method based on a structural alphabet.
    LĂ©onard S; Joseph AP; Srinivasan N; Gelly JC; de Brevern AG
    J Biomol Struct Dyn; 2014 Apr; 32(4):661-8. PubMed ID: 23659291
    [TBL] [Abstract][Full Text] [Related]  

  • 20. Fold recognition by combining sequence profiles derived from evolution and from depth-dependent structural alignment of fragments.
    Zhou H; Zhou Y
    Proteins; 2005 Feb; 58(2):321-8. PubMed ID: 15523666
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 5.