449 related articles for article (PubMed ID: 28299940)
21. ProtQuant: a tool for the label-free quantification of MudPIT proteomics data.
Bridges SM; Magee GB; Wang N; Williams WP; Burgess SC; Nanduri B
BMC Bioinformatics; 2007 Nov; 8 Suppl 7(Suppl 7):S24. PubMed ID: 18047724
[TBL] [Abstract][Full Text] [Related]
22. A semi-empirical approach for predicting unobserved peptide MS/MS spectra from spectral libraries.
Hu Y; Li Y; Lam H
Proteomics; 2011 Dec; 11(24):4702-11. PubMed ID: 22038894
[TBL] [Abstract][Full Text] [Related]
23. freeQuant: A Mass Spectrometry Label-Free Quantification Software Tool for Complex Proteome Analysis.
Deng N; Li Z; Pan C; Duan H
ScientificWorldJournal; 2015; 2015():137076. PubMed ID: 26665161
[TBL] [Abstract][Full Text] [Related]
24. Spectral library searching in proteomics.
Griss J
Proteomics; 2016 Mar; 16(5):729-40. PubMed ID: 26616598
[TBL] [Abstract][Full Text] [Related]
25. Experimental design and data-analysis in label-free quantitative LC/MS proteomics: A tutorial with MSqRob.
Goeminne LJE; Gevaert K; Clement L
J Proteomics; 2018 Jan; 171():23-36. PubMed ID: 28391044
[TBL] [Abstract][Full Text] [Related]
26. A simulated MS/MS library for spectrum-to-spectrum searching in large scale identification of proteins.
Yen CY; Meyer-Arendt K; Eichelberger B; Sun S; Houel S; Old WM; Knight R; Ahn NG; Hunter LE; Resing KA
Mol Cell Proteomics; 2009 Apr; 8(4):857-69. PubMed ID: 19106086
[TBL] [Abstract][Full Text] [Related]
27. Spectral library searching for peptide identification via tandem MS.
Lam H; Aebersold R
Methods Mol Biol; 2010; 604():95-103. PubMed ID: 20013366
[TBL] [Abstract][Full Text] [Related]
28. Comparative database search engine analysis on massive tandem mass spectra of pork-based food products for halal proteomics.
Amir SH; Yuswan MH; Aizat WM; Mansor MK; Desa MNM; Yusof YA; Song LK; Mustafa S
J Proteomics; 2021 Jun; 241():104240. PubMed ID: 33894373
[TBL] [Abstract][Full Text] [Related]
29. Constructing a Tandem Mass Spectral Library for Forensic Ricin Identification.
O'Bryon I; Tucker AE; Kaiser BLD; Wahl KL; Merkley ED
J Proteome Res; 2019 Nov; 18(11):3926-3935. PubMed ID: 31566388
[TBL] [Abstract][Full Text] [Related]
30. Refining comparative proteomics by spectral counting to account for shared peptides and multiple search engines.
Chen YY; Dasari S; Ma ZQ; Vega-Montoto LJ; Li M; Tabb DL
Anal Bioanal Chem; 2012 Sep; 404(4):1115-25. PubMed ID: 22552787
[TBL] [Abstract][Full Text] [Related]
31. Abacus: a computational tool for extracting and pre-processing spectral count data for label-free quantitative proteomic analysis.
Fermin D; Basrur V; Yocum AK; Nesvizhskii AI
Proteomics; 2011 Apr; 11(7):1340-5. PubMed ID: 21360675
[TBL] [Abstract][Full Text] [Related]
32. Spectral Library Search Improves Assignment of TMT Labeled MS/MS Spectra.
Shen J; Pagala VR; Breuer AM; Peng J; Bin Ma ; Wang X
J Proteome Res; 2018 Sep; 17(9):3325-3331. PubMed ID: 30096983
[TBL] [Abstract][Full Text] [Related]
33. Protein Identification from Tandem Mass Spectra by Database Searching.
Edwards NJ
Methods Mol Biol; 2017; 1558():357-380. PubMed ID: 28150247
[TBL] [Abstract][Full Text] [Related]
34. False Discovery Rate Estimation for Hybrid Mass Spectral Library Search Identifications in Bottom-up Proteomics.
Burke MC; Zhang Z; Mirokhin YA; Tchekovskoi DV; Liang Y; Stein SE
J Proteome Res; 2019 Sep; 18(9):3223-3234. PubMed ID: 31364354
[TBL] [Abstract][Full Text] [Related]
35. Corra: Computational framework and tools for LC-MS discovery and targeted mass spectrometry-based proteomics.
Brusniak MY; Bodenmiller B; Campbell D; Cooke K; Eddes J; Garbutt A; Lau H; Letarte S; Mueller LN; Sharma V; Vitek O; Zhang N; Aebersold R; Watts JD
BMC Bioinformatics; 2008 Dec; 9():542. PubMed ID: 19087345
[TBL] [Abstract][Full Text] [Related]
36. Tandem Mass Spectrum Sequencing: An Alternative to Database Search Engines in Shotgun Proteomics.
Muth T; Rapp E; Berven FS; Barsnes H; Vaudel M
Adv Exp Med Biol; 2016; 919():217-226. PubMed ID: 27975219
[TBL] [Abstract][Full Text] [Related]
37. ProtyQuant: Comparing label-free shotgun proteomics datasets using accumulated peptide probabilities.
Winkler R
J Proteomics; 2021 Jan; 230():103985. PubMed ID: 32956841
[TBL] [Abstract][Full Text] [Related]
38. Building and searching tandem mass (MS/MS) spectral libraries for peptide identification in proteomics.
Lam H; Aebersold R
Methods; 2011 Aug; 54(4):424-31. PubMed ID: 21277371
[TBL] [Abstract][Full Text] [Related]
39. LFQuant: a label-free fast quantitative analysis tool for high-resolution LC-MS/MS proteomics data.
Zhang W; Zhang J; Xu C; Li N; Liu H; Ma J; Zhu Y; Xie H
Proteomics; 2012 Dec; 12(23-24):3475-84. PubMed ID: 23081734
[TBL] [Abstract][Full Text] [Related]
40. Scribe: Next Generation Library Searching for DDA Experiments.
Searle BC; Shannon AE; Wilburn DB
J Proteome Res; 2023 Feb; 22(2):482-490. PubMed ID: 36695531
[TBL] [Abstract][Full Text] [Related]
[Previous] [Next] [New Search]