3261 related articles for article (PubMed ID: 28327976)
21. The use of Oxford Nanopore native barcoding for complete genome assembly.
Bayliss SC; Hunt VL; Yokoyama M; Thorpe HA; Feil EJ
Gigascience; 2017 Mar; 6(3):1-6. PubMed ID: 28327913
[TBL] [Abstract][Full Text] [Related]
22. High precision genome sequencing of engineered Gluconobacter oxydans 621H by combining long nanopore and short accurate Illumina reads.
Kranz A; Vogel A; Degner U; Kiefler I; Bott M; Usadel B; Polen T
J Biotechnol; 2017 Sep; 258():197-205. PubMed ID: 28433722
[TBL] [Abstract][Full Text] [Related]
23. A comprehensive investigation of metagenome assembly by linked-read sequencing.
Zhang L; Fang X; Liao H; Zhang Z; Zhou X; Han L; Chen Y; Qiu Q; Li SC
Microbiome; 2020 Nov; 8(1):156. PubMed ID: 33176883
[TBL] [Abstract][Full Text] [Related]
24. Developmental validation of Oxford Nanopore Technology MinION sequence data and the NGSpeciesID bioinformatic pipeline for forensic genetic species identification.
Vasiljevic N; Lim M; Humble E; Seah A; Kratzer A; Morf NV; Prost S; Ogden R
Forensic Sci Int Genet; 2021 Jul; 53():102493. PubMed ID: 33770699
[TBL] [Abstract][Full Text] [Related]
25. Deep learning models for bacteria taxonomic classification of metagenomic data.
Fiannaca A; La Paglia L; La Rosa M; Lo Bosco G; Renda G; Rizzo R; Gaglio S; Urso A
BMC Bioinformatics; 2018 Jul; 19(Suppl 7):198. PubMed ID: 30066629
[TBL] [Abstract][Full Text] [Related]
26. Species-level bacterial community profiling of the healthy sinonasal microbiome using Pacific Biosciences sequencing of full-length 16S rRNA genes.
Earl JP; Adappa ND; Krol J; Bhat AS; Balashov S; Ehrlich RL; Palmer JN; Workman AD; Blasetti M; Sen B; Hammond J; Cohen NA; Ehrlich GD; Mell JC
Microbiome; 2018 Oct; 6(1):190. PubMed ID: 30352611
[TBL] [Abstract][Full Text] [Related]
27. Comparison Between Full-Length 16S rRNA Metabarcoding and Whole Metagenome Sequencing Suggests the Use of Either Is Suitable for Large-Scale Microbiome Studies.
Rubiola S; Macori G; Civera T; Fanning S; Mitchell M; Chiesa F
Foodborne Pathog Dis; 2022 Jul; 19(7):495-504. PubMed ID: 35819265
[TBL] [Abstract][Full Text] [Related]
28. Characterization of Fecal Microbiota with Clinical Specimen Using Long-Read and Short-Read Sequencing Platform.
Wei PL; Hung CS; Kao YW; Lin YC; Lee CY; Chang TH; Shia BC; Lin JC
Int J Mol Sci; 2020 Sep; 21(19):. PubMed ID: 32993155
[TBL] [Abstract][Full Text] [Related]
29. Optimized bacterial community characterization through full-length 16S rRNA gene sequencing utilizing MinION nanopore technology.
Bertolo A; Valido E; Stoyanov J
BMC Microbiol; 2024 Feb; 24(1):58. PubMed ID: 38365589
[TBL] [Abstract][Full Text] [Related]
30. Comparison of Illumina versus Nanopore 16S rRNA Gene Sequencing of the Human Nasal Microbiota.
Heikema AP; Horst-Kreft D; Boers SA; Jansen R; Hiltemann SD; de Koning W; Kraaij R; de Ridder MAJ; van Houten CB; Bont LJ; Stubbs AP; Hays JP
Genes (Basel); 2020 Sep; 11(9):. PubMed ID: 32967250
[TBL] [Abstract][Full Text] [Related]
31. Ultra-accurate microbial amplicon sequencing with synthetic long reads.
Callahan BJ; Grinevich D; Thakur S; Balamotis MA; Yehezkel TB
Microbiome; 2021 Jun; 9(1):130. PubMed ID: 34090540
[TBL] [Abstract][Full Text] [Related]
32. MinION Sequencing of Yeast Mock Communities To Assess the Effect of Databases and ITS-LSU Markers on the Reliability of Metabarcoding Analysis.
Conti A; Casagrande Pierantoni D; Robert V; Corte L; Cardinali G
Microbiol Spectr; 2023 Feb; 11(1):e0105222. PubMed ID: 36519933
[TBL] [Abstract][Full Text] [Related]
33. Relative Performance of MinION (Oxford Nanopore Technologies) versus Sequel (Pacific Biosciences) Third-Generation Sequencing Instruments in Identification of Agricultural and Forest Fungal Pathogens.
Loit K; Adamson K; Bahram M; Puusepp R; Anslan S; Kiiker R; Drenkhan R; Tedersoo L
Appl Environ Microbiol; 2019 Nov; 85(21):. PubMed ID: 31444199
[TBL] [Abstract][Full Text] [Related]
34. Shotgun metagenome data of a defined mock community using Oxford Nanopore, PacBio and Illumina technologies.
Sevim V; Lee J; Egan R; Clum A; Hundley H; Lee J; Everroad RC; Detweiler AM; Bebout BM; Pett-Ridge J; Göker M; Murray AE; Lindemann SR; Klenk HP; O'Malley R; Zane M; Cheng JF; Copeland A; Daum C; Singer E; Woyke T
Sci Data; 2019 Nov; 6(1):285. PubMed ID: 31772173
[TBL] [Abstract][Full Text] [Related]
35. Accurate taxonomic assignment of short pyrosequencing reads.
Clemente JC; Jansson J; Valiente G
Pac Symp Biocomput; 2010; ():3-9. PubMed ID: 19908352
[TBL] [Abstract][Full Text] [Related]
36. Selection of marker genes for genetic barcoding of microorganisms and binning of metagenomic reads by Barcoder software tools.
Rotimi AM; Pierneef R; Reva ON
BMC Bioinformatics; 2018 Aug; 19(1):309. PubMed ID: 30165813
[TBL] [Abstract][Full Text] [Related]
37. The newest Oxford Nanopore R10.4.1 full-length 16S rRNA sequencing enables the accurate resolution of species-level microbial community profiling.
Zhang T; Li H; Ma S; Cao J; Liao H; Huang Q; Chen W
Appl Environ Microbiol; 2023 Oct; 89(10):e0060523. PubMed ID: 37800969
[TBL] [Abstract][Full Text] [Related]
38. Comparison of 6 DNA extraction methods for isolation of high yield of high molecular weight DNA suitable for shotgun metagenomics Nanopore sequencing to detect bacteria.
Gand M; Bloemen B; Vanneste K; Roosens NHC; De Keersmaecker SCJ
BMC Genomics; 2023 Aug; 24(1):438. PubMed ID: 37537550
[TBL] [Abstract][Full Text] [Related]
39. Rapid 16S rRNA next-generation sequencing of polymicrobial clinical samples for diagnosis of complex bacterial infections.
Salipante SJ; Sengupta DJ; Rosenthal C; Costa G; Spangler J; Sims EH; Jacobs MA; Miller SI; Hoogestraat DR; Cookson BT; McCoy C; Matsen FA; Shendure J; Lee CC; Harkins TT; Hoffman NG
PLoS One; 2013; 8(5):e65226. PubMed ID: 23734239
[TBL] [Abstract][Full Text] [Related]
40. Microbial resolution of whole genome shotgun and 16S amplicon metagenomic sequencing using publicly available NEON data.
Brumfield KD; Huq A; Colwell RR; Olds JL; Leddy MB
PLoS One; 2020; 15(2):e0228899. PubMed ID: 32053657
[TBL] [Abstract][Full Text] [Related]
[Previous] [Next] [New Search]