These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.


BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

244 related articles for article (PubMed ID: 28334151)

  • 1. Strategies for processing and quality control of Illumina genotyping arrays.
    Zhao S; Jing W; Samuels DC; Sheng Q; Shyr Y; Guo Y
    Brief Bioinform; 2018 Sep; 19(5):765-775. PubMed ID: 28334151
    [TBL] [Abstract][Full Text] [Related]  

  • 2. The COPILOT Raw Illumina Genotyping QC Protocol.
    Patel H; Lee SH; Breen G; Menzel S; Ojewunmi O; Dobson RJB
    Curr Protoc; 2022 Apr; 2(4):e373. PubMed ID: 35452565
    [TBL] [Abstract][Full Text] [Related]  

  • 3. SNPQC--an R pipeline for quality control of Illumina SNP genotyping array data.
    Gondro C; Porto-Neto LR; Lee SH
    Anim Genet; 2014 Oct; 45(5):758-61. PubMed ID: 25040453
    [TBL] [Abstract][Full Text] [Related]  

  • 4. argyle: An R Package for Analysis of Illumina Genotyping Arrays.
    Morgan AP
    G3 (Bethesda); 2015 Dec; 6(2):281-6. PubMed ID: 26684930
    [TBL] [Abstract][Full Text] [Related]  

  • 5. Genotyping Informatics and Quality Control for 100,000 Subjects in the Genetic Epidemiology Research on Adult Health and Aging (GERA) Cohort.
    Kvale MN; Hesselson S; Hoffmann TJ; Cao Y; Chan D; Connell S; Croen LA; Dispensa BP; Eshragh J; Finn A; Gollub J; Iribarren C; Jorgenson E; Kushi LH; Lao R; Lu Y; Ludwig D; Mathauda GK; McGuire WB; Mei G; Miles S; Mittman M; Patil M; Quesenberry CP; Ranatunga D; Rowell S; Sadler M; Sakoda LC; Shapero M; Shen L; Shenoy T; Smethurst D; Somkin CP; Van Den Eeden SK; Walter L; Wan E; Webster T; Whitmer RA; Wong S; Zau C; Zhan Y; Schaefer C; Kwok PY; Risch N
    Genetics; 2015 Aug; 200(4):1051-60. PubMed ID: 26092718
    [TBL] [Abstract][Full Text] [Related]  

  • 6. Low-depth genotyping-by-sequencing (GBS) in a bovine population: strategies to maximize the selection of high quality genotypes and the accuracy of imputation.
    Brouard JS; Boyle B; Ibeagha-Awemu EM; Bissonnette N
    BMC Genet; 2017 Apr; 18(1):32. PubMed ID: 28381212
    [TBL] [Abstract][Full Text] [Related]  

  • 7. Illumina human exome genotyping array clustering and quality control.
    Guo Y; He J; Zhao S; Wu H; Zhong X; Sheng Q; Samuels DC; Shyr Y; Long J
    Nat Protoc; 2014 Nov; 9(11):2643-62. PubMed ID: 25321409
    [TBL] [Abstract][Full Text] [Related]  

  • 8. StrandScript: evaluation of Illumina genotyping array design and strand correction.
    Wang J; Samuels DC; Shyr Y; Guo Y
    Bioinformatics; 2017 Aug; 33(15):2399-2401. PubMed ID: 28402386
    [TBL] [Abstract][Full Text] [Related]  

  • 9. Genome-Wide SNP Calling from Genotyping by Sequencing (GBS) Data: A Comparison of Seven Pipelines and Two Sequencing Technologies.
    Torkamaneh D; Laroche J; Belzile F
    PLoS One; 2016; 11(8):e0161333. PubMed ID: 27547936
    [TBL] [Abstract][Full Text] [Related]  

  • 10. iCall: a genotype-calling algorithm for rare, low-frequency and common variants on the Illumina exome array.
    Zhou J; Tantoso E; Wong LP; Ong RT; Bei JX; Li Y; Liu J; Khor CC; Teo YY
    Bioinformatics; 2014 Jun; 30(12):1714-20. PubMed ID: 24567545
    [TBL] [Abstract][Full Text] [Related]  

  • 11. Effect of genome-wide genotyping and reference panels on rare variants imputation.
    Zheng HF; Ladouceur M; Greenwood CM; Richards JB
    J Genet Genomics; 2012 Oct; 39(10):545-50. PubMed ID: 23089364
    [TBL] [Abstract][Full Text] [Related]  

  • 12. Quality control and integration of genotypes from two calling pipelines for whole genome sequence data in the Alzheimer's disease sequencing project.
    Naj AC; Lin H; Vardarajan BN; White S; Lancour D; Ma Y; Schmidt M; Sun F; Butkiewicz M; Bush WS; Kunkle BW; Malamon J; Amin N; Choi SH; Hamilton-Nelson KL; van der Lee SJ; Gupta N; Koboldt DC; Saad M; Wang B; Nato AQ; Sohi HK; Kuzma A; ; Wang LS; Cupples LA; van Duijn C; Seshadri S; Schellenberg GD; Boerwinkle E; Bis JC; Dupuis J; Salerno WJ; Wijsman EM; Martin ER; DeStefano AL
    Genomics; 2019 Jul; 111(4):808-818. PubMed ID: 29857119
    [TBL] [Abstract][Full Text] [Related]  

  • 13. Alternative Applications of Genotyping Array Data Using Multivariant Methods.
    Samuels DC; Below JE; Ness S; Yu H; Leng S; Guo Y
    Trends Genet; 2020 Nov; 36(11):857-867. PubMed ID: 32773169
    [TBL] [Abstract][Full Text] [Related]  

  • 14. A multi-array multi-SNP genotyping algorithm for Affymetrix SNP microarrays.
    Xiao Y; Segal MR; Yang YH; Yeh RF
    Bioinformatics; 2007 Jun; 23(12):1459-67. PubMed ID: 17459966
    [TBL] [Abstract][Full Text] [Related]  

  • 15. Content and Performance of the MiniMUGA Genotyping Array: A New Tool To Improve Rigor and Reproducibility in Mouse Research.
    Sigmon JS; Blanchard MW; Baric RS; Bell TA; Brennan J; Brockmann GA; Burks AW; Calabrese JM; Caron KM; Cheney RE; Ciavatta D; Conlon F; Darr DB; Faber J; Franklin C; Gershon TR; Gralinski L; Gu B; Gaines CH; Hagan RS; Heimsath EG; Heise MT; Hock P; Ideraabdullah F; Jennette JC; Kafri T; Kashfeen A; Kulis M; Kumar V; Linnertz C; Livraghi-Butrico A; Lloyd KCK; Lutz C; Lynch RM; Magnuson T; Matsushima GK; McMullan R; Miller DR; Mohlke KL; Moy SS; Murphy CEY; Najarian M; O'Brien L; Palmer AA; Philpot BD; Randell SH; Reinholdt L; Ren Y; Rockwood S; Rogala AR; Saraswatula A; Sassetti CM; Schisler JC; Schoenrock SA; Shaw GD; Shorter JR; Smith CM; St Pierre CL; Tarantino LM; Threadgill DW; Valdar W; Vilen BJ; Wardwell K; Whitmire JK; Williams L; Zylka MJ; Ferris MT; McMillan L; Manuel de Villena FP
    Genetics; 2020 Dec; 216(4):905-930. PubMed ID: 33067325
    [TBL] [Abstract][Full Text] [Related]  

  • 16. Securing the use of existing sample collections for future human genetic research.
    Kanoungi G; Nürnberg P; Nothnagel M
    Eur J Hum Genet; 2017 May; 25(5):522-529. PubMed ID: 28145429
    [TBL] [Abstract][Full Text] [Related]  

  • 17. Quality control of genotypes using heritability estimates of gene content at the marker.
    Forneris NS; Legarra A; Vitezica ZG; Tsuruta S; Aguilar I; Misztal I; Cantet RJ
    Genetics; 2015 Mar; 199(3):675-81. PubMed ID: 25567991
    [TBL] [Abstract][Full Text] [Related]  

  • 18. Promises and pitfalls of Illumina sequencing for HIV resistance genotyping.
    Brumme CJ; Poon AFY
    Virus Res; 2017 Jul; 239():97-105. PubMed ID: 27993623
    [TBL] [Abstract][Full Text] [Related]  

  • 19. Genotyping-in-Thousands by sequencing (GT-seq): A cost effective SNP genotyping method based on custom amplicon sequencing.
    Campbell NR; Harmon SA; Narum SR
    Mol Ecol Resour; 2015 Jul; 15(4):855-67. PubMed ID: 25476721
    [TBL] [Abstract][Full Text] [Related]  

  • 20. Practicability of mitochondrial heteroplasmy detection through an Illumina genotyping array.
    Zhang P; Samuels DC; Zhao S; Wang J; Shyr Y; Guo Y
    Mitochondrion; 2016 Nov; 31():75-78. PubMed ID: 27628068
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 13.