BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

227 related articles for article (PubMed ID: 28338692)

  • 1. Computational design of self-assembling cyclic protein homo-oligomers.
    Fallas JA; Ueda G; Sheffler W; Nguyen V; McNamara DE; Sankaran B; Pereira JH; Parmeggiani F; Brunette TJ; Cascio D; Yeates TR; Zwart P; Baker D
    Nat Chem; 2017 Apr; 9(4):353-360. PubMed ID: 28338692
    [TBL] [Abstract][Full Text] [Related]  

  • 2. Design of Diverse Asymmetric Pockets in
    Gerben SR; Borst AJ; Hicks DR; Moczygemba I; Feldman D; Coventry B; Yang W; Bera AK; Miranda M; Kang A; Nguyen H; Baker D
    Biochemistry; 2023 Jan; 62(2):358-368. PubMed ID: 36627259
    [TBL] [Abstract][Full Text] [Related]  

  • 3. Cyclic oligomer design with de novo αβ-proteins.
    Lin YR; Koga N; Vorobiev SM; Baker D
    Protein Sci; 2017 Nov; 26(11):2187-2194. PubMed ID: 28801928
    [TBL] [Abstract][Full Text] [Related]  

  • 4. Reconfigurable asymmetric protein assemblies through implicit negative design.
    Sahtoe DD; Praetorius F; Courbet A; Hsia Y; Wicky BIM; Edman NI; Miller LM; Timmermans BJR; Decarreau J; Morris HM; Kang A; Bera AK; Baker D
    Science; 2022 Jan; 375(6578):eabj7662. PubMed ID: 35050655
    [TBL] [Abstract][Full Text] [Related]  

  • 5. Modeling and Structure Determination of Homo-Oligomeric Proteins: An Overview of Challenges and Current Approaches.
    Gaber A; Pavšič M
    Int J Mol Sci; 2021 Aug; 22(16):. PubMed ID: 34445785
    [TBL] [Abstract][Full Text] [Related]  

  • 6. Modular repeat protein sculpting using rigid helical junctions.
    Brunette TJ; Bick MJ; Hansen JM; Chow CM; Kollman JM; Baker D
    Proc Natl Acad Sci U S A; 2020 Apr; 117(16):8870-8875. PubMed ID: 32245816
    [TBL] [Abstract][Full Text] [Related]  

  • 7. De novo design of protein homodimers containing tunable symmetric protein pockets.
    Hicks DR; Kennedy MA; Thompson KA; DeWitt M; Coventry B; Kang A; Bera AK; Brunette TJ; Sankaran B; Stoddard B; Baker D
    Proc Natl Acad Sci U S A; 2022 Jul; 119(30):e2113400119. PubMed ID: 35862457
    [TBL] [Abstract][Full Text] [Related]  

  • 8. Numerical validation of IFT in the analysis of protein-surfactant complexes with SAXS and SANS.
    Franklin JM; Surampudi LN; Ashbaugh HS; Pozzo DC
    Langmuir; 2012 Aug; 28(34):12593-600. PubMed ID: 22861495
    [TBL] [Abstract][Full Text] [Related]  

  • 9. Comparative analyses of quaternary arrangements in homo-oligomeric proteins in superfamilies: Functional implications.
    Sudha G; Srinivasan N
    Proteins; 2016 Sep; 84(9):1190-202. PubMed ID: 27177429
    [TBL] [Abstract][Full Text] [Related]  

  • 10. Computational design of self-assembling protein nanomaterials with atomic level accuracy.
    King NP; Sheffler W; Sawaya MR; Vollmar BS; Sumida JP; André I; Gonen T; Yeates TO; Baker D
    Science; 2012 Jun; 336(6085):1171-4. PubMed ID: 22654060
    [TBL] [Abstract][Full Text] [Related]  

  • 11. Accounting for observed small angle X-ray scattering profile in the protein-protein docking server ClusPro.
    Xia B; Mamonov A; Leysen S; Allen KN; Strelkov SV; Paschalidis ICh; Vajda S; Kozakov D
    J Comput Chem; 2015 Jul; 36(20):1568-72. PubMed ID: 26095982
    [TBL] [Abstract][Full Text] [Related]  

  • 12. Design and structure of two new protein cages illustrate successes and ongoing challenges in protein engineering.
    Cannon KA; Park RU; Boyken SE; Nattermann U; Yi S; Baker D; King NP; Yeates TO
    Protein Sci; 2020 Apr; 29(4):919-929. PubMed ID: 31840320
    [TBL] [Abstract][Full Text] [Related]  

  • 13. Reconstruction of quaternary structure from X-ray scattering by equilibrium mixtures of biological macromolecules.
    Petoukhov MV; Billas IM; Takacs M; Graewert MA; Moras D; Svergun DI
    Biochemistry; 2013 Oct; 52(39):6844-55. PubMed ID: 24000896
    [TBL] [Abstract][Full Text] [Related]  

  • 14. ClusPro FMFT-SAXS: Ultra-fast Filtering Using Small-Angle X-ray Scattering Data in Protein Docking.
    Ignatov M; Kazennov A; Kozakov D
    J Mol Biol; 2018 Jul; 430(15):2249-2255. PubMed ID: 29626538
    [TBL] [Abstract][Full Text] [Related]  

  • 15. Large-scale identification of coevolution signals across homo-oligomeric protein interfaces by direct coupling analysis.
    Uguzzoni G; John Lovis S; Oteri F; Schug A; Szurmant H; Weigt M
    Proc Natl Acad Sci U S A; 2017 Mar; 114(13):E2662-E2671. PubMed ID: 28289198
    [TBL] [Abstract][Full Text] [Related]  

  • 16. Protein oligomer structure prediction using GALAXY in CASP14.
    Park T; Woo H; Yang J; Kwon S; Won J; Seok C
    Proteins; 2021 Dec; 89(12):1844-1851. PubMed ID: 34363243
    [TBL] [Abstract][Full Text] [Related]  

  • 17. Self-Assembling Supramolecular Nanostructures Constructed from de Novo Extender Protein Nanobuilding Blocks.
    Kobayashi N; Inano K; Sasahara K; Sato T; Miyazawa K; Fukuma T; Hecht MH; Song C; Murata K; Arai R
    ACS Synth Biol; 2018 May; 7(5):1381-1394. PubMed ID: 29690759
    [TBL] [Abstract][Full Text] [Related]  

  • 18. Modeling and minimizing CAPRI round 30 symmetrical protein complexes from CASP-11 structural models.
    El Houasli M; Maigret B; Devignes MD; Ghoorah AW; Grudinin S; Ritchie DW
    Proteins; 2017 Mar; 85(3):463-469. PubMed ID: 27701764
    [TBL] [Abstract][Full Text] [Related]  

  • 19. Determination of protein oligomeric structure from small-angle X-ray scattering.
    Korasick DA; Tanner JJ
    Protein Sci; 2018 Apr; 27(4):814-824. PubMed ID: 29352739
    [TBL] [Abstract][Full Text] [Related]  

  • 20. Statistical analysis of interface similarity in crystals of homologous proteins.
    Xu Q; Canutescu AA; Wang G; Shapovalov M; Obradovic Z; Dunbrack RL
    J Mol Biol; 2008 Aug; 381(2):487-507. PubMed ID: 18599072
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 12.