These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.


BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

296 related articles for article (PubMed ID: 28341774)

  • 1. RNA-DNA hybrid (R-loop) immunoprecipitation mapping: an analytical workflow to evaluate inherent biases.
    Halász L; Karányi Z; Boros-Oláh B; Kuik-Rózsa T; Sipos É; Nagy É; Mosolygó-L Á; Mázló A; Rajnavölgyi É; Halmos G; Székvölgyi L
    Genome Res; 2017 Jun; 27(6):1063-1073. PubMed ID: 28341774
    [TBL] [Abstract][Full Text] [Related]  

  • 2. High-resolution, strand-specific R-loop mapping via S9.6-based DNA-RNA immunoprecipitation and high-throughput sequencing.
    Sanz LA; Chédin F
    Nat Protoc; 2019 Jun; 14(6):1734-1755. PubMed ID: 31053798
    [TBL] [Abstract][Full Text] [Related]  

  • 3. DNA:RNA Immunoprecipitation from S. pombe Cells for qPCR and Genome-Wide Sequencing.
    Vachez L; Teste C; Vanoosthuyse V
    Methods Mol Biol; 2022; 2528():411-428. PubMed ID: 35704207
    [TBL] [Abstract][Full Text] [Related]  

  • 4. Detection and Characterization of R Loop Structures.
    Boque-Sastre R; Soler M; Guil S
    Methods Mol Biol; 2017; 1543():231-242. PubMed ID: 28349431
    [TBL] [Abstract][Full Text] [Related]  

  • 5. Genome-wide R-loop analysis defines unique roles for DDX5, XRN2, and PRMT5 in DNA/RNA hybrid resolution.
    Villarreal OD; Mersaoui SY; Yu Z; Masson JY; Richard S
    Life Sci Alliance; 2020 Oct; 3(10):. PubMed ID: 32747416
    [TBL] [Abstract][Full Text] [Related]  

  • 6. Quantitative DNA-RNA Immunoprecipitation Sequencing with Spike-Ins.
    Crossley MP; Cimprich KA
    Methods Mol Biol; 2022; 2528():381-410. PubMed ID: 35704206
    [TBL] [Abstract][Full Text] [Related]  

  • 7. S1-DRIP-seq identifies high expression and polyA tracts as major contributors to R-loop formation.
    Wahba L; Costantino L; Tan FJ; Zimmer A; Koshland D
    Genes Dev; 2016 Jun; 30(11):1327-38. PubMed ID: 27298336
    [TBL] [Abstract][Full Text] [Related]  

  • 8. Mapping R-Loops and RNA:DNA Hybrids with S9.6-Based Immunoprecipitation Methods.
    Sanz LA; Castillo-Guzman D; Chédin F
    J Vis Exp; 2021 Aug; (174):. PubMed ID: 34515688
    [TBL] [Abstract][Full Text] [Related]  

  • 9. DROPA: DRIP-seq optimized peak annotator.
    Russo M; De Lucca B; Flati T; Gioiosa S; Chillemi G; Capranico G
    BMC Bioinformatics; 2019 Aug; 20(1):414. PubMed ID: 31387525
    [TBL] [Abstract][Full Text] [Related]  

  • 10. qDRIP: a method to quantitatively assess RNA-DNA hybrid formation genome-wide.
    Crossley MP; Bocek MJ; Hamperl S; Swigut T; Cimprich KA
    Nucleic Acids Res; 2020 Aug; 48(14):e84. PubMed ID: 32544226
    [TBL] [Abstract][Full Text] [Related]  

  • 11. Immunoprecipitation of DNA:RNA Hybrids Using the S9.6 Antibody.
    Gibbons HR; Aune TM
    Methods Mol Biol; 2020; 2161():195-207. PubMed ID: 32681514
    [TBL] [Abstract][Full Text] [Related]  

  • 12. R-ChIP for genome-wide mapping of R-loops by using catalytically inactive RNASEH1.
    Chen JY; Zhang X; Fu XD; Chen L
    Nat Protoc; 2019 May; 14(5):1661-1685. PubMed ID: 30996261
    [TBL] [Abstract][Full Text] [Related]  

  • 13. Genome-Wide Analysis of DNA-RNA Hybrids in Yeast by DRIPc-Seq and DRIP-Seq.
    García-Rubio M; Soler-Oliva ME; Aguilera A
    Methods Mol Biol; 2022; 2528():429-443. PubMed ID: 35704208
    [TBL] [Abstract][Full Text] [Related]  

  • 14. Genome-wide profiling of yeast DNA:RNA hybrid prone sites with DRIP-chip.
    Chan YA; Aristizabal MJ; Lu PY; Luo Z; Hamza A; Kobor MS; Stirling PC; Hieter P
    PLoS Genet; 2014 Apr; 10(4):e1004288. PubMed ID: 24743342
    [TBL] [Abstract][Full Text] [Related]  

  • 15. Identification of R-loop-forming Sequences in
    Alecki C; Francis NJ
    Bio Protoc; 2021 May; 11(9):e4011. PubMed ID: 34124311
    [TBL] [Abstract][Full Text] [Related]  

  • 16. Analysis of long-range chromatin interactions using Chromosome Conformation Capture.
    Naumova N; Smith EM; Zhan Y; Dekker J
    Methods; 2012 Nov; 58(3):192-203. PubMed ID: 22903059
    [TBL] [Abstract][Full Text] [Related]  

  • 17. Detection of TERRA R-Loops at Human Telomeres.
    Glousker G; Fernandes RV; Feretzaki M; Lingner J
    Methods Mol Biol; 2022; 2528():159-171. PubMed ID: 35704191
    [TBL] [Abstract][Full Text] [Related]  

  • 18. Applicability of a System for fully automated nucleic acid extraction from formalin-fixed paraffin-embedded sections for routine KRAS mutation testing.
    Lehmann A; Schewe C; Hennig G; Denkert C; Weichert W; Budczies J; Dietel M
    Diagn Mol Pathol; 2012 Jun; 21(2):114-9. PubMed ID: 22555094
    [TBL] [Abstract][Full Text] [Related]  

  • 19. Sex-specific variation in R-loop formation in Drosophila melanogaster.
    Stanek TJ; Cao W; Mehra RM; Ellison CE
    PLoS Genet; 2022 Jun; 18(6):e1010268. PubMed ID: 35687614
    [TBL] [Abstract][Full Text] [Related]  

  • 20. Characterization of R-Loop Structures Using Single-Molecule R-Loop Footprinting and Sequencing.
    Malig M; Chedin F
    Methods Mol Biol; 2020; 2161():209-228. PubMed ID: 32681515
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 15.