248 related articles for article (PubMed ID: 28343001)
1. Comprehensive functional analysis of large lists of genes and proteins.
Mlecnik B; Galon J; Bindea G
J Proteomics; 2018 Jan; 171():2-10. PubMed ID: 28343001
[TBL] [Abstract][Full Text] [Related]
2. ClueGO: a Cytoscape plug-in to decipher functionally grouped gene ontology and pathway annotation networks.
Bindea G; Mlecnik B; Hackl H; Charoentong P; Tosolini M; Kirilovsky A; Fridman WH; Pagès F; Trajanoski Z; Galon J
Bioinformatics; 2009 Apr; 25(8):1091-3. PubMed ID: 19237447
[TBL] [Abstract][Full Text] [Related]
3. Automated exploration of gene ontology term and pathway networks with ClueGO-REST.
Mlecnik B; Galon J; Bindea G
Bioinformatics; 2019 Oct; 35(19):3864-3866. PubMed ID: 30847467
[TBL] [Abstract][Full Text] [Related]
4. GRYFUN: a web application for GO term annotation visualization and analysis in protein sets.
Bastos HP; Sousa L; Clarke LA; Couto FM
PLoS One; 2015; 10(3):e0119631. PubMed ID: 25794277
[TBL] [Abstract][Full Text] [Related]
5. Cytoscape StringApp: Network Analysis and Visualization of Proteomics Data.
Doncheva NT; Morris JH; Gorodkin J; Jensen LJ
J Proteome Res; 2019 Feb; 18(2):623-632. PubMed ID: 30450911
[TBL] [Abstract][Full Text] [Related]
6. Functional annotation and biological interpretation of proteomics data.
Carnielli CM; Winck FV; Paes Leme AF
Biochim Biophys Acta; 2015 Jan; 1854(1):46-54. PubMed ID: 25448015
[TBL] [Abstract][Full Text] [Related]
7. Who tangos with GOA?-Use of Gene Ontology Annotation (GOA) for biological interpretation of '-omics' data and for validation of automatic annotation tools.
Lee V; Camon E; Dimmer E; Barrell D; Apweiler R
In Silico Biol; 2005; 5(1):5-8. PubMed ID: 15972001
[TBL] [Abstract][Full Text] [Related]
8. FunMappOne: a tool to hierarchically organize and visually navigate functional gene annotations in multiple experiments.
Scala G; Serra A; Marwah VS; Saarimäki LA; Greco D
BMC Bioinformatics; 2019 Feb; 20(1):79. PubMed ID: 30767762
[TBL] [Abstract][Full Text] [Related]
9. Bioinformatics approaches for the functional interpretation of protein lists: from ontology term enrichment to network analysis.
Laukens K; Naulaerts S; Berghe WV
Proteomics; 2015 Mar; 15(5-6):981-96. PubMed ID: 25430566
[TBL] [Abstract][Full Text] [Related]
10. Lists2Networks: integrated analysis of gene/protein lists.
Lachmann A; Ma'ayan A
BMC Bioinformatics; 2010 Feb; 11():87. PubMed ID: 20152038
[TBL] [Abstract][Full Text] [Related]
11. Bioinformatics Methods to Deduce Biological Interpretation from Proteomics Data.
Patel K; Singh M; Gowda H
Methods Mol Biol; 2017; 1549():147-161. PubMed ID: 27975290
[TBL] [Abstract][Full Text] [Related]
12. Automatic extraction of gene ontology annotation and its correlation with clusters in protein networks.
Daraselia N; Yuryev A; Egorov S; Mazo I; Ispolatov I
BMC Bioinformatics; 2007 Jul; 8():243. PubMed ID: 17620146
[TBL] [Abstract][Full Text] [Related]
13. Pathway enrichment analysis and visualization of omics data using g:Profiler, GSEA, Cytoscape and EnrichmentMap.
Reimand J; Isserlin R; Voisin V; Kucera M; Tannus-Lopes C; Rostamianfar A; Wadi L; Meyer M; Wong J; Xu C; Merico D; Bader GD
Nat Protoc; 2019 Feb; 14(2):482-517. PubMed ID: 30664679
[TBL] [Abstract][Full Text] [Related]
14. DAVID Bioinformatics Resources: expanded annotation database and novel algorithms to better extract biology from large gene lists.
Huang DW; Sherman BT; Tan Q; Kir J; Liu D; Bryant D; Guo Y; Stephens R; Baseler MW; Lane HC; Lempicki RA
Nucleic Acids Res; 2007 Jul; 35(Web Server issue):W169-75. PubMed ID: 17576678
[TBL] [Abstract][Full Text] [Related]
15. How to use and integrate bioinformatics tools to compare proteomic data from distinct conditions? A tutorial using the pathological similarities between Aortic Valve Stenosis and Coronary Artery Disease as a case-study.
Trindade F; Ferreira R; Magalhães B; Leite-Moreira A; Falcão-Pires I; Vitorino R
J Proteomics; 2018 Jan; 171():37-52. PubMed ID: 28336332
[TBL] [Abstract][Full Text] [Related]
16. Cytoscape: software for visualization and analysis of biological networks.
Kohl M; Wiese S; Warscheid B
Methods Mol Biol; 2011; 696():291-303. PubMed ID: 21063955
[TBL] [Abstract][Full Text] [Related]
17. Gene Ontology analysis in multiple gene clusters under multiple hypothesis testing framework.
Zhong S; Xie D
Artif Intell Med; 2007 Oct; 41(2):105-15. PubMed ID: 17913480
[TBL] [Abstract][Full Text] [Related]
18. OmicsViz: Cytoscape plug-in for visualizing omics data across species.
Xia T; Dickerson JA
Bioinformatics; 2008 Nov; 24(21):2557-8. PubMed ID: 18779234
[TBL] [Abstract][Full Text] [Related]
19. AVID: an integrative framework for discovering functional relationships among proteins.
Jiang T; Keating AE
BMC Bioinformatics; 2005 Jun; 6():136. PubMed ID: 15929793
[TBL] [Abstract][Full Text] [Related]
20. FunRich: An open access standalone functional enrichment and interaction network analysis tool.
Pathan M; Keerthikumar S; Ang CS; Gangoda L; Quek CY; Williamson NA; Mouradov D; Sieber OM; Simpson RJ; Salim A; Bacic A; Hill AF; Stroud DA; Ryan MT; Agbinya JI; Mariadason JM; Burgess AW; Mathivanan S
Proteomics; 2015 Aug; 15(15):2597-601. PubMed ID: 25921073
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]