BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

455 related articles for article (PubMed ID: 28348222)

  • 1. Form and function of topologically associating genomic domains in budding yeast.
    Eser U; Chandler-Brown D; Ay F; Straight AF; Duan Z; Noble WS; Skotheim JM
    Proc Natl Acad Sci U S A; 2017 Apr; 114(15):E3061-E3070. PubMed ID: 28348222
    [TBL] [Abstract][Full Text] [Related]  

  • 2. Conserved forkhead dimerization motif controls DNA replication timing and spatial organization of chromosomes in
    Ostrow AZ; Kalhor R; Gan Y; Villwock SK; Linke C; Barberis M; Chen L; Aparicio OM
    Proc Natl Acad Sci U S A; 2017 Mar; 114(12):E2411-E2419. PubMed ID: 28265091
    [TBL] [Abstract][Full Text] [Related]  

  • 3. Topologically associating domains are stable units of replication-timing regulation.
    Pope BD; Ryba T; Dileep V; Yue F; Wu W; Denas O; Vera DL; Wang Y; Hansen RS; Canfield TK; Thurman RE; Cheng Y; Gülsoy G; Dennis JH; Snyder MP; Stamatoyannopoulos JA; Taylor J; Hardison RC; Kahveci T; Ren B; Gilbert DM
    Nature; 2014 Nov; 515(7527):402-5. PubMed ID: 25409831
    [TBL] [Abstract][Full Text] [Related]  

  • 4. Spatial organization of the budding yeast genome in the cell nucleus and identification of specific chromatin interactions from multi-chromosome constrained chromatin model.
    Gürsoy G; Xu Y; Liang J
    PLoS Comput Biol; 2017 Jul; 13(7):e1005658. PubMed ID: 28704374
    [TBL] [Abstract][Full Text] [Related]  

  • 5. Replication Domains: Genome Compartmentalization into Functional Replication Units.
    Zhao PA; Rivera-Mulia JC; Gilbert DM
    Adv Exp Med Biol; 2017; 1042():229-257. PubMed ID: 29357061
    [TBL] [Abstract][Full Text] [Related]  

  • 6. Fkh1 and Fkh2 bind multiple chromosomal elements in the S. cerevisiae genome with distinct specificities and cell cycle dynamics.
    Ostrow AZ; Nellimoottil T; Knott SR; Fox CA; Tavaré S; Aparicio OM
    PLoS One; 2014; 9(2):e87647. PubMed ID: 24504085
    [TBL] [Abstract][Full Text] [Related]  

  • 7. Large-Scale Chromatin Structure-Function Relationships during the Cell Cycle and Development: Insights from Replication Timing.
    Dileep V; Rivera-Mulia JC; Sima J; Gilbert DM
    Cold Spring Harb Symp Quant Biol; 2015; 80():53-63. PubMed ID: 26590169
    [TBL] [Abstract][Full Text] [Related]  

  • 8. Invisible cities: segregated domains in the yeast genome with distinct structural and functional attributes.
    Nikolaou C
    Curr Genet; 2018 Feb; 64(1):247-258. PubMed ID: 28780612
    [TBL] [Abstract][Full Text] [Related]  

  • 9. Comparative 3D genome structure analysis of the fission and the budding yeast.
    Gong K; Tjong H; Zhou XJ; Alber F
    PLoS One; 2015; 10(3):e0119672. PubMed ID: 25799503
    [TBL] [Abstract][Full Text] [Related]  

  • 10. Quantitative BrdU immunoprecipitation method demonstrates that Fkh1 and Fkh2 are rate-limiting activators of replication origins that reprogram replication timing in G1 phase.
    Peace JM; Villwock SK; Zeytounian JL; Gan Y; Aparicio OM
    Genome Res; 2016 Mar; 26(3):365-75. PubMed ID: 26728715
    [TBL] [Abstract][Full Text] [Related]  

  • 11. Active chromatin and transcription play a key role in chromosome partitioning into topologically associating domains.
    Ulianov SV; Khrameeva EE; Gavrilov AA; Flyamer IM; Kos P; Mikhaleva EA; Penin AA; Logacheva MD; Imakaev MV; Chertovich A; Gelfand MS; Shevelyov YY; Razin SV
    Genome Res; 2016 Jan; 26(1):70-84. PubMed ID: 26518482
    [TBL] [Abstract][Full Text] [Related]  

  • 12. Topologically associating domains and their long-range contacts are established during early G1 coincident with the establishment of the replication-timing program.
    Dileep V; Ay F; Sima J; Vera DL; Noble WS; Gilbert DM
    Genome Res; 2015 Aug; 25(8):1104-13. PubMed ID: 25995270
    [TBL] [Abstract][Full Text] [Related]  

  • 13. HiTAD: detecting the structural and functional hierarchies of topologically associating domains from chromatin interactions.
    Wang XT; Cui W; Peng C
    Nucleic Acids Res; 2017 Nov; 45(19):e163. PubMed ID: 28977529
    [TBL] [Abstract][Full Text] [Related]  

  • 14. ChIP-exo analysis highlights Fkh1 and Fkh2 transcription factors as hubs that integrate multi-scale networks in budding yeast.
    Mondeel TDGA; Holland P; Nielsen J; Barberis M
    Nucleic Acids Res; 2019 Sep; 47(15):7825-7841. PubMed ID: 31299083
    [TBL] [Abstract][Full Text] [Related]  

  • 15. Computational predictions of structures of multichromosomes of budding yeast.
    Gürsoy G; Xu Y; Liang J
    Annu Int Conf IEEE Eng Med Biol Soc; 2014; 2014():3945-8. PubMed ID: 25570855
    [TBL] [Abstract][Full Text] [Related]  

  • 16. Identification of Fkh1 and Fkh2 binding site variants associated with dynamically bound DNA elements including replication origins.
    Ostrow AZ; Aparicio OM
    Nucleus; 2017 Nov; 8(6):600-604. PubMed ID: 29099275
    [TBL] [Abstract][Full Text] [Related]  

  • 17. Evolutionary stability of topologically associating domains is associated with conserved gene regulation.
    Krefting J; Andrade-Navarro MA; Ibn-Salem J
    BMC Biol; 2018 Aug; 16(1):87. PubMed ID: 30086749
    [TBL] [Abstract][Full Text] [Related]  

  • 18. The Rabl configuration limits topological entanglement of chromosomes in budding yeast.
    Pouokam M; Cruz B; Burgess S; Segal MR; Vazquez M; Arsuaga J
    Sci Rep; 2019 May; 9(1):6795. PubMed ID: 31043625
    [TBL] [Abstract][Full Text] [Related]  

  • 19. Methods for the Analysis of Topologically Associating Domains (TADs).
    Zufferey M; Tavernari D; Ciriello G
    Methods Mol Biol; 2022; 2301():39-59. PubMed ID: 34415530
    [TBL] [Abstract][Full Text] [Related]  

  • 20. Mutation rates across budding yeast chromosome VI are correlated with replication timing.
    Lang GI; Murray AW
    Genome Biol Evol; 2011; 3():799-811. PubMed ID: 21666225
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 23.