143 related articles for article (PubMed ID: 28355123)
1. GFFview: A Web Server for Parsing and Visualizing Annotation Information of Eukaryotic Genome.
Deng F; Chen SY; Wu ZL; Hu Y; Jia X; Lai SJ
J Comput Biol; 2017 Oct; 24(10):1060-1064. PubMed ID: 28355123
[TBL] [Abstract][Full Text] [Related]
2. Improved annotation with de novo transcriptome assembly in four social amoeba species.
Singh R; Lawal HM; Schilde C; Glöckner G; Barton GJ; Schaap P; Cole C
BMC Genomics; 2017 Jan; 18(1):120. PubMed ID: 28143409
[TBL] [Abstract][Full Text] [Related]
3. Challenges and strategies in transcriptome assembly and differential gene expression quantification. A comprehensive in silico assessment of RNA-seq experiments.
Vijay N; Poelstra JW; Künstner A; Wolf JB
Mol Ecol; 2013 Feb; 22(3):620-34. PubMed ID: 22998089
[TBL] [Abstract][Full Text] [Related]
4. GASS: genome structural annotation for Eukaryotes based on species similarity.
Wang Y; Chen L; Song N; Lei X
BMC Genomics; 2015 Mar; 16(1):150. PubMed ID: 25764973
[TBL] [Abstract][Full Text] [Related]
5. The power of single molecule real-time sequencing technology in the de novo assembly of a eukaryotic genome.
Sakai H; Naito K; Ogiso-Tanaka E; Takahashi Y; Iseki K; Muto C; Satou K; Teruya K; Shiroma A; Shimoji M; Hirano T; Itoh T; Kaga A; Tomooka N
Sci Rep; 2015 Nov; 5():16780. PubMed ID: 26616024
[TBL] [Abstract][Full Text] [Related]
6. Identifying Sequenced Eukaryotic Genomes and Transcriptomes with diArk.
Kollmar M; Simm D
Methods Mol Biol; 2018; 1757():1-19. PubMed ID: 29761453
[TBL] [Abstract][Full Text] [Related]
7. Combining independent de novo assemblies optimizes the coding transcriptome for nonconventional model eukaryotic organisms.
Cerveau N; Jackson DJ
BMC Bioinformatics; 2016 Dec; 17(1):525. PubMed ID: 27938328
[TBL] [Abstract][Full Text] [Related]
8. Bioinformatic Pipelines to Analyze lncRNAs RNAseq Data.
Agnelli L; Bortoluzzi S; Pruneri G
Methods Mol Biol; 2021; 2348():55-69. PubMed ID: 34160799
[TBL] [Abstract][Full Text] [Related]
9. Protein Sequence Annotation Tool (PSAT): a centralized web-based meta-server for high-throughput sequence annotations.
Leung E; Huang A; Cadag E; Montana A; Soliman JL; Zhou CL
BMC Bioinformatics; 2016 Jan; 17():43. PubMed ID: 26792120
[TBL] [Abstract][Full Text] [Related]
10. The ChIP-Seq tools and web server: a resource for analyzing ChIP-seq and other types of genomic data.
Ambrosini G; Dreos R; Kumar S; Bucher P
BMC Genomics; 2016 Nov; 17(1):938. PubMed ID: 27863463
[TBL] [Abstract][Full Text] [Related]
11. Improving eukaryotic genome annotation using single molecule mRNA sequencing.
Magrini V; Gao X; Rosa BA; McGrath S; Zhang X; Hallsworth-Pepin K; Martin J; Hawdon J; Wilson RK; Mitreva M
BMC Genomics; 2018 Mar; 19(1):172. PubMed ID: 29495964
[TBL] [Abstract][Full Text] [Related]
12. GFF Utilities: GffRead and GffCompare.
Pertea G; Pertea M
F1000Res; 2020; 9():. PubMed ID: 32489650
[No Abstract] [Full Text] [Related]
13. SplicingTypesAnno: annotating and quantifying alternative splicing events for RNA-Seq data.
Sun X; Zuo F; Ru Y; Guo J; Yan X; Sablok G
Comput Methods Programs Biomed; 2015 Apr; 119(1):53-62. PubMed ID: 25720307
[TBL] [Abstract][Full Text] [Related]
14. afterParty: turning raw transcriptomes into permanent resources.
Jones M; Blaxter M
BMC Bioinformatics; 2013 Oct; 14():301. PubMed ID: 24093729
[TBL] [Abstract][Full Text] [Related]
15. Empowering the detection of ChIP-seq "basic peaks" (bPeaks) in small eukaryotic genomes with a web user-interactive interface.
Denecker T; Lelandais G
BMC Res Notes; 2018 Oct; 11(1):698. PubMed ID: 30286789
[TBL] [Abstract][Full Text] [Related]
16. A survey of the complex transcriptome from the highly polyploid sugarcane genome using full-length isoform sequencing and de novo assembly from short read sequencing.
Hoang NV; Furtado A; Mason PJ; Marquardt A; Kasirajan L; Thirugnanasambandam PP; Botha FC; Henry RJ
BMC Genomics; 2017 May; 18(1):395. PubMed ID: 28532419
[TBL] [Abstract][Full Text] [Related]
17. EuGene: An Automated Integrative Gene Finder for Eukaryotes and Prokaryotes.
Sallet E; Gouzy J; Schiex T
Methods Mol Biol; 2019; 1962():97-120. PubMed ID: 31020556
[TBL] [Abstract][Full Text] [Related]
18. GWIPS-viz: 2018 update.
Michel AM; Kiniry SJ; O'Connor PBF; Mullan JP; Baranov PV
Nucleic Acids Res; 2018 Jan; 46(D1):D823-D830. PubMed ID: 28977460
[TBL] [Abstract][Full Text] [Related]
19. Construction of a public CHO cell line transcript database using versatile bioinformatics analysis pipelines.
Rupp O; Becker J; Brinkrolf K; Timmermann C; Borth N; Pühler A; Noll T; Goesmann A
PLoS One; 2014; 9(1):e85568. PubMed ID: 24427317
[TBL] [Abstract][Full Text] [Related]
20. Next-Generation Sequencing and the Crustacean Immune System: The Need for Alternatives in Immune Gene Annotation.
Clark KF; Greenwood SJ
Integr Comp Biol; 2016 Dec; 56(6):1113-1130. PubMed ID: 27252213
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]
