251 related articles for article (PubMed ID: 28356056)
1. M-AMST: an automatic 3D neuron tracing method based on mean shift and adapted minimum spanning tree.
Wan Z; He Y; Hao M; Yang J; Zhong N
BMC Bioinformatics; 2017 Mar; 18(1):197. PubMed ID: 28356056
[TBL] [Abstract][Full Text] [Related]
2. FMST: an Automatic Neuron Tracing Method Based on Fast Marching and Minimum Spanning Tree.
Yang J; Hao M; Liu X; Wan Z; Zhong N; Peng H
Neuroinformatics; 2019 Apr; 17(2):185-196. PubMed ID: 30039210
[TBL] [Abstract][Full Text] [Related]
3. Rivulet: 3D Neuron Morphology Tracing with Iterative Back-Tracking.
Liu S; Zhang D; Liu S; Feng D; Peng H; Cai W
Neuroinformatics; 2016 Oct; 14(4):387-401. PubMed ID: 27184384
[TBL] [Abstract][Full Text] [Related]
4. Semi-automatic 3D morphological reconstruction of neurons with densely branching morphology: Application to retinal AII amacrine cells imaged with multi-photon excitation microscopy.
Zandt BJ; Losnegård A; Hodneland E; Veruki ML; Lundervold A; Hartveit E
J Neurosci Methods; 2017 Mar; 279():101-118. PubMed ID: 28115187
[TBL] [Abstract][Full Text] [Related]
5. BigNeuron: a resource to benchmark and predict performance of algorithms for automated tracing of neurons in light microscopy datasets.
Manubens-Gil L; Zhou Z; Chen H; Ramanathan A; Liu X; Liu Y; Bria A; Gillette T; Ruan Z; Yang J; Radojević M; Zhao T; Cheng L; Qu L; Liu S; Bouchard KE; Gu L; Cai W; Ji S; Roysam B; Wang CW; Yu H; Sironi A; Iascone DM; Zhou J; Bas E; Conde-Sousa E; Aguiar P; Li X; Li Y; Nanda S; Wang Y; Muresan L; Fua P; Ye B; He HY; Staiger JF; Peter M; Cox DN; Simonneau M; Oberlaender M; Jefferis G; Ito K; Gonzalez-Bellido P; Kim J; Rubel E; Cline HT; Zeng H; Nern A; Chiang AS; Yao J; Roskams J; Livesey R; Stevens J; Liu T; Dang C; Guo Y; Zhong N; Tourassi G; Hill S; Hawrylycz M; Koch C; Meijering E; Ascoli GA; Peng H
Nat Methods; 2023 Jun; 20(6):824-835. PubMed ID: 37069271
[TBL] [Abstract][Full Text] [Related]
6. APP2: automatic tracing of 3D neuron morphology based on hierarchical pruning of a gray-weighted image distance-tree.
Xiao H; Peng H
Bioinformatics; 2013 Jun; 29(11):1448-54. PubMed ID: 23603332
[TBL] [Abstract][Full Text] [Related]
7. Multi-scale segmentation of neurons based on one-class classification.
Hernandez-Herrera P; Papadakis M; Kakadiaris IA
J Neurosci Methods; 2016 Jun; 266():94-106. PubMed ID: 27038663
[TBL] [Abstract][Full Text] [Related]
8. Structure-Guided Segmentation for 3D Neuron Reconstruction.
Yang B; Liu M; Wang Y; Zhang K; Meijering E
IEEE Trans Med Imaging; 2022 Apr; 41(4):903-914. PubMed ID: 34748483
[TBL] [Abstract][Full Text] [Related]
9. 3D Neuron Reconstruction in Tangled Neuronal Image With Deep Networks.
Li Q; Shen L
IEEE Trans Med Imaging; 2020 Feb; 39(2):425-435. PubMed ID: 31295108
[TBL] [Abstract][Full Text] [Related]
10. Segmentation and tracing of single neurons from 3D confocal microscope images.
Basu S; Condron B; Aksel A; Acton S
IEEE J Biomed Health Inform; 2013 Mar; 17(2):319-35. PubMed ID: 22835569
[TBL] [Abstract][Full Text] [Related]
11. Functional grouping of similar genes using eigenanalysis on minimum spanning tree based neighborhood graph.
Jothi R; Mohanty SK; Ojha A
Comput Biol Med; 2016 Apr; 71():135-48. PubMed ID: 26945461
[TBL] [Abstract][Full Text] [Related]
12. MDL constrained 3-D grayscale skeletonization algorithm for automated extraction of dendrites and spines from fluorescence confocal images.
Yuan X; Trachtenberg JT; Potter SM; Roysam B
Neuroinformatics; 2009 Dec; 7(4):213-32. PubMed ID: 20012509
[TBL] [Abstract][Full Text] [Related]
13. A 3D Tubular Flux Model for Centerline Extraction in Neuron Volumetric Images.
Wang X; Liu M; Wang Y; Fan J; Meijering E
IEEE Trans Med Imaging; 2022 May; 41(5):1069-1079. PubMed ID: 34826295
[TBL] [Abstract][Full Text] [Related]
14. Three-dimensional neuron tracing by voxel scooping.
Rodriguez A; Ehlenberger DB; Hof PR; Wearne SL
J Neurosci Methods; 2009 Oct; 184(1):169-75. PubMed ID: 19632273
[TBL] [Abstract][Full Text] [Related]
15. Ensemble Neuron Tracer for 3D Neuron Reconstruction.
Wang CW; Lee YC; Pradana H; Zhou Z; Peng H
Neuroinformatics; 2017 Apr; 15(2):185-198. PubMed ID: 28185058
[TBL] [Abstract][Full Text] [Related]
16. TReMAP: Automatic 3D Neuron Reconstruction Based on Tracing, Reverse Mapping and Assembling of 2D Projections.
Zhou Z; Liu X; Long B; Peng H
Neuroinformatics; 2016 Jan; 14(1):41-50. PubMed ID: 26306866
[TBL] [Abstract][Full Text] [Related]
17. BlastNeuron for Automated Comparison, Retrieval and Clustering of 3D Neuron Morphologies.
Wan Y; Long F; Qu L; Xiao H; Hawrylycz M; Myers EW; Peng H
Neuroinformatics; 2015 Oct; 13(4):487-99. PubMed ID: 26036213
[TBL] [Abstract][Full Text] [Related]
18. SparseTracer: the Reconstruction of Discontinuous Neuronal Morphology in Noisy Images.
Li S; Zhou H; Quan T; Li J; Li Y; Li A; Luo Q; Gong H; Zeng S
Neuroinformatics; 2017 Apr; 15(2):133-149. PubMed ID: 27928656
[TBL] [Abstract][Full Text] [Related]
19. Neuron anatomy structure reconstruction based on a sliding filter.
Luo G; Sui D; Wang K; Chae J
BMC Bioinformatics; 2015 Oct; 16():342. PubMed ID: 26498293
[TBL] [Abstract][Full Text] [Related]
20. Automated 3-D Neuron Tracing With Precise Branch Erasing and Confidence Controlled Back Tracking.
Liu S; Zhang D; Song Y; Peng H; Cai W
IEEE Trans Med Imaging; 2018 Nov; 37(11):2441-2452. PubMed ID: 29993997
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]