These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.


BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

414 related articles for article (PubMed ID: 28361673)

  • 1. AfterQC: automatic filtering, trimming, error removing and quality control for fastq data.
    Chen S; Huang T; Zhou Y; Han Y; Xu M; Gu J
    BMC Bioinformatics; 2017 Mar; 18(Suppl 3):80. PubMed ID: 28361673
    [TBL] [Abstract][Full Text] [Related]  

  • 2. ClinQC: a tool for quality control and cleaning of Sanger and NGS data in clinical research.
    Pandey RV; Pabinger S; Kriegner A; Weinhäusel A
    BMC Bioinformatics; 2016 Feb; 17():56. PubMed ID: 26830926
    [TBL] [Abstract][Full Text] [Related]  

  • 3. Gencore: an efficient tool to generate consensus reads for error suppressing and duplicate removing of NGS data.
    Chen S; Zhou Y; Chen Y; Huang T; Liao W; Xu Y; Li Z; Gu J
    BMC Bioinformatics; 2019 Dec; 20(Suppl 23):606. PubMed ID: 31881822
    [TBL] [Abstract][Full Text] [Related]  

  • 4. Blue: correcting sequencing errors using consensus and context.
    Greenfield P; Duesing K; Papanicolaou A; Bauer DC
    Bioinformatics; 2014 Oct; 30(19):2723-32. PubMed ID: 24919879
    [TBL] [Abstract][Full Text] [Related]  

  • 5. EasyQC: Tool with Interactive User Interface for Efficient Next-Generation Sequencing Data Quality Control.
    Rangamaran VR; Uppili B; Gopal D; Ramalingam K
    J Comput Biol; 2018 Dec; 25(12):1301-1311. PubMed ID: 30204482
    [No Abstract]   [Full Text] [Related]  

  • 6. FastqCleaner: an interactive Bioconductor application for quality-control, filtering and trimming of FASTQ files.
    Roser LG; Agüero F; Sánchez DO
    BMC Bioinformatics; 2019 Jun; 20(1):361. PubMed ID: 31253077
    [TBL] [Abstract][Full Text] [Related]  

  • 7. UNDR ROVER - a fast and accurate variant caller for targeted DNA sequencing.
    Park DJ; Li R; Lau E; Georgeson P; Nguyen-Dumont T; Pope BJ
    BMC Bioinformatics; 2016 Apr; 17():165. PubMed ID: 27083325
    [TBL] [Abstract][Full Text] [Related]  

  • 8. Rapid evaluation and quality control of next generation sequencing data with FaQCs.
    Lo CC; Chain PS
    BMC Bioinformatics; 2014 Nov; 15(1):366. PubMed ID: 25408143
    [TBL] [Abstract][Full Text] [Related]  

  • 9. SeqPurge: highly-sensitive adapter trimming for paired-end NGS data.
    Sturm M; Schroeder C; Bauer P
    BMC Bioinformatics; 2016 May; 17():208. PubMed ID: 27161244
    [TBL] [Abstract][Full Text] [Related]  

  • 10. BEETL-fastq: a searchable compressed archive for DNA reads.
    Janin L; Schulz-Trieglaff O; Cox AJ
    Bioinformatics; 2014 Oct; 30(19):2796-801. PubMed ID: 24950811
    [TBL] [Abstract][Full Text] [Related]  

  • 11. AlienTrimmer: a tool to quickly and accurately trim off multiple short contaminant sequences from high-throughput sequencing reads.
    Criscuolo A; Brisse S
    Genomics; 2013; 102(5-6):500-6. PubMed ID: 23912058
    [TBL] [Abstract][Full Text] [Related]  

  • 12. fastQ_brew: module for analysis, preprocessing, and reformatting of FASTQ sequence data.
    O'Halloran DM
    BMC Res Notes; 2017 Jul; 10(1):275. PubMed ID: 28701181
    [TBL] [Abstract][Full Text] [Related]  

  • 13. FQStat: a parallel architecture for very high-speed assessment of sequencing quality metrics.
    Chanumolu SK; Albahrani M; Otu HH
    BMC Bioinformatics; 2019 Aug; 20(1):424. PubMed ID: 31416440
    [TBL] [Abstract][Full Text] [Related]  

  • 14. ADEPT, a dynamic next generation sequencing data error-detection program with trimming.
    Feng S; Lo CC; Li PE; Chain PS
    BMC Bioinformatics; 2016 Feb; 17():109. PubMed ID: 26928302
    [TBL] [Abstract][Full Text] [Related]  

  • 15. An Efficient Trimming Algorithm based on Multi-Feature Fusion Scoring Model for NGS Data.
    Liao X; Li M; Zou Y; Wu FX; Pan Y; Wang J
    IEEE/ACM Trans Comput Biol Bioinform; 2020; 17(3):728-738. PubMed ID: 30736001
    [TBL] [Abstract][Full Text] [Related]  

  • 16. Pollux: platform independent error correction of single and mixed genomes.
    Marinier E; Brown DG; McConkey BJ
    BMC Bioinformatics; 2015 Jan; 16(1):10. PubMed ID: 25592313
    [TBL] [Abstract][Full Text] [Related]  

  • 17. VirVarSeq: a low-frequency virus variant detection pipeline for Illumina sequencing using adaptive base-calling accuracy filtering.
    Verbist BM; Thys K; Reumers J; Wetzels Y; Van der Borght K; Talloen W; Aerssens J; Clement L; Thas O
    Bioinformatics; 2015 Jan; 31(1):94-101. PubMed ID: 25178459
    [TBL] [Abstract][Full Text] [Related]  

  • 18. Introduction of the Python script STRinNGS for analysis of STR regions in FASTQ or BAM files and expansion of the Danish STR sequence database to 11 STRs.
    Friis SL; Buchard A; Rockenbauer E; Børsting C; Morling N
    Forensic Sci Int Genet; 2016 Mar; 21():68-75. PubMed ID: 26722765
    [TBL] [Abstract][Full Text] [Related]  

  • 19. MutScan: fast detection and visualization of target mutations by scanning FASTQ data.
    Chen S; Huang T; Wen T; Li H; Xu M; Gu J
    BMC Bioinformatics; 2018 Jan; 19(1):16. PubMed ID: 29357822
    [TBL] [Abstract][Full Text] [Related]  

  • 20. In search of perfect reads.
    Pal S; Aluru S
    BMC Bioinformatics; 2015; 16 Suppl 17(Suppl 17):S7. PubMed ID: 26679555
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 21.