270 related articles for article (PubMed ID: 28369191)
1. The RNASeq-er API-a gateway to systematically updated analysis of public RNA-seq data.
Petryszak R; Fonseca NA; Füllgrabe A; Huerta L; Keays M; Tang YA; Brazma A
Bioinformatics; 2017 Jul; 33(14):2218-2220. PubMed ID: 28369191
[TBL] [Abstract][Full Text] [Related]
2. A pipeline for RNA-seq data processing and quality assessment.
Goncalves A; Tikhonov A; Brazma A; Kapushesky M
Bioinformatics; 2011 Mar; 27(6):867-9. PubMed ID: 21233166
[TBL] [Abstract][Full Text] [Related]
3. The EMBL-EBI bioinformatics web and programmatic tools framework.
Li W; Cowley A; Uludag M; Gur T; McWilliam H; Squizzato S; Park YM; Buso N; Lopez R
Nucleic Acids Res; 2015 Jul; 43(W1):W580-4. PubMed ID: 25845596
[TBL] [Abstract][Full Text] [Related]
4. The European Nucleotide Archive in 2020.
Harrison PW; Ahamed A; Aslam R; Alako BTF; Burgin J; Buso N; Courtot M; Fan J; Gupta D; Haseeb M; Holt S; Ibrahim T; Ivanov E; Jayathilaka S; Balavenkataraman Kadhirvelu V; Kumar M; Lopez R; Kay S; Leinonen R; Liu X; O'Cathail C; Pakseresht A; Park Y; Pesant S; Rahman N; Rajan J; Sokolov A; Vijayaraja S; Waheed Z; Zyoud A; Burdett T; Cochrane G
Nucleic Acids Res; 2021 Jan; 49(D1):D82-D85. PubMed ID: 33175160
[TBL] [Abstract][Full Text] [Related]
5. iSeq: Web-Based RNA-seq Data Analysis and Visualization.
Zhang C; Fan C; Gan J; Zhu P; Kong L; Li C
Methods Mol Biol; 2018; 1754():167-181. PubMed ID: 29536443
[TBL] [Abstract][Full Text] [Related]
6. How well do RNA-Seq differential gene expression tools perform in a complex eukaryote? A case study in Arabidopsis thaliana.
Froussios K; Schurch NJ; Mackinnon K; Gierliński M; Duc C; Simpson GG; Barton GJ
Bioinformatics; 2019 Sep; 35(18):3372-3377. PubMed ID: 30726870
[TBL] [Abstract][Full Text] [Related]
7. smallWig: parallel compression of RNA-seq WIG files.
Wang Z; Weissman T; Milenkovic O
Bioinformatics; 2016 Jan; 32(2):173-80. PubMed ID: 26424856
[TBL] [Abstract][Full Text] [Related]
8. Informatics for RNA Sequencing: A Web Resource for Analysis on the Cloud.
Griffith M; Walker JR; Spies NC; Ainscough BJ; Griffith OL
PLoS Comput Biol; 2015 Aug; 11(8):e1004393. PubMed ID: 26248053
[TBL] [Abstract][Full Text] [Related]
9. The European Nucleotide Archive in 2018.
Harrison PW; Alako B; Amid C; Cerdeño-Tárraga A; Cleland I; Holt S; Hussein A; Jayathilaka S; Kay S; Keane T; Leinonen R; Liu X; Martínez-Villacorta J; Milano A; Pakseresht N; Rajan J; Reddy K; Richards E; Rosello M; Silvester N; Smirnov D; Toribio AL; Vijayaraja S; Cochrane G
Nucleic Acids Res; 2019 Jan; 47(D1):D84-D88. PubMed ID: 30395270
[TBL] [Abstract][Full Text] [Related]
10. Falco: a quick and flexible single-cell RNA-seq processing framework on the cloud.
Yang A; Troup M; Lin P; Ho JW
Bioinformatics; 2017 Mar; 33(5):767-769. PubMed ID: 28025200
[TBL] [Abstract][Full Text] [Related]
11. Using EMBL-EBI Services via Web Interface and Programmatically via Web Services.
Madeira F; Madhusoodanan N; Lee J; Eusebi A; Niewielska A; Tivey ARN; Meacham S; Lopez R; Butcher S
Curr Protoc; 2024 Jun; 4(6):e1065. PubMed ID: 38857087
[TBL] [Abstract][Full Text] [Related]
12. Search and sequence analysis tools services from EMBL-EBI in 2022.
Madeira F; Pearce M; Tivey ARN; Basutkar P; Lee J; Edbali O; Madhusoodanan N; Kolesnikov A; Lopez R
Nucleic Acids Res; 2022 Jul; 50(W1):W276-W279. PubMed ID: 35412617
[TBL] [Abstract][Full Text] [Related]
13. Shiny-Seq: advanced guided transcriptome analysis.
Sundararajan Z; Knoll R; Hombach P; Becker M; Schultze JL; Ulas T
BMC Res Notes; 2019 Jul; 12(1):432. PubMed ID: 31319888
[TBL] [Abstract][Full Text] [Related]
14. piPipes: a set of pipelines for piRNA and transposon analysis via small RNA-seq, RNA-seq, degradome- and CAGE-seq, ChIP-seq and genomic DNA sequencing.
Han BW; Wang W; Zamore PD; Weng Z
Bioinformatics; 2015 Feb; 31(4):593-5. PubMed ID: 25342065
[TBL] [Abstract][Full Text] [Related]
15. The START App: a web-based RNAseq analysis and visualization resource.
Nelson JW; Sklenar J; Barnes AP; Minnier J
Bioinformatics; 2017 Feb; 33(3):447-449. PubMed ID: 28171615
[TBL] [Abstract][Full Text] [Related]
16. Public web-based services from the European Bioinformatics Institute.
Harte N; Silventoinen V; Quevillon E; Robinson S; Kallio K; Fustero X; Patel P; Jokinen P; Lopez R;
Nucleic Acids Res; 2004 Jul; 32(Web Server issue):W3-9. PubMed ID: 15215339
[TBL] [Abstract][Full Text] [Related]
17. The European Bioinformatics Institute in 2020: building a global infrastructure of interconnected data resources for the life sciences.
Cook CE; Stroe O; Cochrane G; Birney E; Apweiler R
Nucleic Acids Res; 2020 Jan; 48(D1):D17-D23. PubMed ID: 31701143
[TBL] [Abstract][Full Text] [Related]
18. Improvements to services at the European Nucleotide Archive.
Leinonen R; Akhtar R; Birney E; Bonfield J; Bower L; Corbett M; Cheng Y; Demiralp F; Faruque N; Goodgame N; Gibson R; Hoad G; Hunter C; Jang M; Leonard S; Lin Q; Lopez R; Maguire M; McWilliam H; Plaister S; Radhakrishnan R; Sobhany S; Slater G; Ten Hoopen P; Valentin F; Vaughan R; Zalunin V; Zerbino D; Cochrane G
Nucleic Acids Res; 2010 Jan; 38(Database issue):D39-45. PubMed ID: 19906712
[TBL] [Abstract][Full Text] [Related]
19. RNASeqBrowser: a genome browser for simultaneous visualization of raw strand specific RNAseq reads and UCSC genome browser custom tracks.
An J; Lai J; Wood DL; Sajjanhar A; Wang C; Tevz G; Lehman ML; Nelson CC
BMC Genomics; 2015 Mar; 16(1):145. PubMed ID: 25766521
[TBL] [Abstract][Full Text] [Related]
20. BISR-RNAseq: an efficient and scalable RNAseq analysis workflow with interactive report generation.
Gadepalli VS; Ozer HG; Yilmaz AS; Pietrzak M; Webb A
BMC Bioinformatics; 2019 Dec; 20(Suppl 24):670. PubMed ID: 31861980
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]