These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.


BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

116 related articles for article (PubMed ID: 28375549)

  • 1. Homology-based Modeling of Rhodopsin-like Family Members in the Inactive State: Structural Analysis and Deduction of Tips for Modeling and Optimization.
    Pappalardo M; Rayan M; Abu-Lafi S; Leonardi ME; Milardi D; Guccione S; Rayan A
    Mol Inform; 2017 Aug; 36(8):. PubMed ID: 28375549
    [TBL] [Abstract][Full Text] [Related]  

  • 2. How to Choose the Suitable Template for Homology Modelling of GPCRs: 5-HT7 Receptor as a Test Case.
    Shahaf N; Pappalardo M; Basile L; Guccione S; Rayan A
    Mol Inform; 2016 Sep; 35(8-9):414-23. PubMed ID: 27546045
    [TBL] [Abstract][Full Text] [Related]  

  • 3. Improving homology modeling of G-protein coupled receptors through multiple-template derived conserved inter-residue interactions.
    Chaudhari R; Heim AJ; Li Z
    J Comput Aided Mol Des; 2015 May; 29(5):413-20. PubMed ID: 25503850
    [TBL] [Abstract][Full Text] [Related]  

  • 4. GPCR homology model template selection benchmarking: Global versus local similarity measures.
    Castleman PN; Sears CK; Cole JA; Baker DL; Parrill AL
    J Mol Graph Model; 2019 Jan; 86():235-246. PubMed ID: 30390544
    [TBL] [Abstract][Full Text] [Related]  

  • 5. Key issues in the computational simulation of GPCR function: representation of loop domains.
    Mehler EL; Periole X; Hassan SA; Weinstein H
    J Comput Aided Mol Des; 2002 Nov; 16(11):841-53. PubMed ID: 12825797
    [TBL] [Abstract][Full Text] [Related]  

  • 6. Ab initio computational modeling of loops in G-protein-coupled receptors: lessons from the crystal structure of rhodopsin.
    Mehler EL; Hassan SA; Kortagere S; Weinstein H
    Proteins; 2006 Aug; 64(3):673-90. PubMed ID: 16729264
    [TBL] [Abstract][Full Text] [Related]  

  • 7. Using molecular dynamics for the refinement of atomistic models of GPCRs by homology modeling.
    Lupala CS; Rasaeifar B; Gomez-Gutierrez P; Perez JJ
    J Biomol Struct Dyn; 2018 Jul; 36(9):2436-2448. PubMed ID: 28728517
    [TBL] [Abstract][Full Text] [Related]  

  • 8. Homology Modeling of Class A G-Protein-Coupled Receptors in the Age of the Structure Boom.
    Tiss A; Ben Boubaker R; Henrion D; Guissouma H; Chabbert M
    Methods Mol Biol; 2021; 2315():73-97. PubMed ID: 34302671
    [TBL] [Abstract][Full Text] [Related]  

  • 9. Structural mimicry in G protein-coupled receptors: implications of the high-resolution structure of rhodopsin for structure-function analysis of rhodopsin-like receptors.
    Ballesteros JA; Shi L; Javitch JA
    Mol Pharmacol; 2001 Jul; 60(1):1-19. PubMed ID: 11408595
    [TBL] [Abstract][Full Text] [Related]  

  • 10. Comparative sequence and structural analyses of G-protein-coupled receptor crystal structures and implications for molecular models.
    Worth CL; Kleinau G; Krause G
    PLoS One; 2009 Sep; 4(9):e7011. PubMed ID: 19756152
    [TBL] [Abstract][Full Text] [Related]  

  • 11. X-ray structure breakthroughs in the GPCR transmembrane region.
    Topiol S; Sabio M
    Biochem Pharmacol; 2009 Jul; 78(1):11-20. PubMed ID: 19447219
    [TBL] [Abstract][Full Text] [Related]  

  • 12. Integrating Pharmacophore into Membrane Molecular Dynamics Simulations to Improve Homology Modeling of G Protein-coupled Receptors with Ligand Selectivity: A2A Adenosine Receptor as an Example.
    Zeng L; Guan M; Jin H; Liu Z; Zhang L
    Chem Biol Drug Des; 2015 Dec; 86(6):1438-50. PubMed ID: 26072970
    [TBL] [Abstract][Full Text] [Related]  

  • 13. G protein-coupled receptor rhodopsin.
    Palczewski K
    Annu Rev Biochem; 2006; 75():743-67. PubMed ID: 16756510
    [TBL] [Abstract][Full Text] [Related]  

  • 14. FoldGPCR: structure prediction protocol for the transmembrane domain of G protein-coupled receptors from class A.
    Michino M; Chen J; Stevens RC; Brooks CL
    Proteins; 2010 Aug; 78(10):2189-201. PubMed ID: 20544957
    [TBL] [Abstract][Full Text] [Related]  

  • 15. Agonist-induced conformational changes in bovine rhodopsin: insight into activation of G-protein-coupled receptors.
    Bhattacharya S; Hall SE; Vaidehi N
    J Mol Biol; 2008 Oct; 382(2):539-55. PubMed ID: 18638482
    [TBL] [Abstract][Full Text] [Related]  

  • 16. Modern homology modeling of G-protein coupled receptors: which structural template to use?
    Mobarec JC; Sanchez R; Filizola M
    J Med Chem; 2009 Aug; 52(16):5207-16. PubMed ID: 19627087
    [TBL] [Abstract][Full Text] [Related]  

  • 17. Relevance of rhodopsin studies for GPCR activation.
    Deupi X
    Biochim Biophys Acta; 2014 May; 1837(5):674-82. PubMed ID: 24041646
    [TBL] [Abstract][Full Text] [Related]  

  • 18. Homology modeling of a Class A GPCR in the inactive conformation: A quantitative analysis of the correlation between model/template sequence identity and model accuracy.
    Costanzi S; Skorski M; Deplano A; Habermehl B; Mendoza M; Wang K; Biederman M; Dawson J; Gao J
    J Mol Graph Model; 2016 Nov; 70():140-152. PubMed ID: 27723562
    [TBL] [Abstract][Full Text] [Related]  

  • 19. Structure modeling of all identified G protein-coupled receptors in the human genome.
    Zhang Y; Devries ME; Skolnick J
    PLoS Comput Biol; 2006 Feb; 2(2):e13. PubMed ID: 16485037
    [TBL] [Abstract][Full Text] [Related]  

  • 20. PREDICT modeling and in-silico screening for G-protein coupled receptors.
    Shacham S; Marantz Y; Bar-Haim S; Kalid O; Warshaviak D; Avisar N; Inbal B; Heifetz A; Fichman M; Topf M; Naor Z; Noiman S; Becker OM
    Proteins; 2004 Oct; 57(1):51-86. PubMed ID: 15326594
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 6.