343 related articles for article (PubMed ID: 28376755)
1. Reconstruction of the evolution of microbial defense systems.
Puigbò P; Makarova KS; Kristensen DM; Wolf YI; Koonin EV
BMC Evol Biol; 2017 Apr; 17(1):94. PubMed ID: 28376755
[TBL] [Abstract][Full Text] [Related]
2. Genomes in turmoil: quantification of genome dynamics in prokaryote supergenomes.
Puigbò P; Lobkovsky AE; Kristensen DM; Wolf YI; Koonin EV
BMC Biol; 2014 Aug; 12():66. PubMed ID: 25141959
[TBL] [Abstract][Full Text] [Related]
3. Phylogenomics of Cas4 family nucleases.
Hudaiberdiev S; Shmakov S; Wolf YI; Terns MP; Makarova KS; Koonin EV
BMC Evol Biol; 2017 Nov; 17(1):232. PubMed ID: 29179671
[TBL] [Abstract][Full Text] [Related]
4. The Turbulent Network Dynamics of Microbial Evolution and the Statistical Tree of Life.
Koonin EV
J Mol Evol; 2015 Jun; 80(5-6):244-50. PubMed ID: 25894542
[TBL] [Abstract][Full Text] [Related]
5. Genome trees constructed using five different approaches suggest new major bacterial clades.
Wolf YI; Rogozin IB; Grishin NV; Tatusov RL; Koonin EV
BMC Evol Biol; 2001 Oct; 1():8. PubMed ID: 11734060
[TBL] [Abstract][Full Text] [Related]
6. Evolutionary Genomics of Defense Systems in Archaea and Bacteria.
Koonin EV; Makarova KS; Wolf YI
Annu Rev Microbiol; 2017 Sep; 71():233-261. PubMed ID: 28657885
[TBL] [Abstract][Full Text] [Related]
7. AnnoTree: visualization and exploration of a functionally annotated microbial tree of life.
Mendler K; Chen H; Parks DH; Lobb B; Hug LA; Doxey AC
Nucleic Acids Res; 2019 May; 47(9):4442-4448. PubMed ID: 31081040
[TBL] [Abstract][Full Text] [Related]
8. Bacterial Genes Outnumber Archaeal Genes in Eukaryotic Genomes.
Brueckner J; Martin WF
Genome Biol Evol; 2020 Apr; 12(4):282-292. PubMed ID: 32142116
[TBL] [Abstract][Full Text] [Related]
9. Updated clusters of orthologous genes for Archaea: a complex ancestor of the Archaea and the byways of horizontal gene transfer.
Wolf YI; Makarova KS; Yutin N; Koonin EV
Biol Direct; 2012 Dec; 7():46. PubMed ID: 23241446
[TBL] [Abstract][Full Text] [Related]
10. Genomes in flux: the evolution of archaeal and proteobacterial gene content.
Snel B; Bork P; Huynen MA
Genome Res; 2002 Jan; 12(1):17-25. PubMed ID: 11779827
[TBL] [Abstract][Full Text] [Related]
11. Clusters of orthologous genes for 41 archaeal genomes and implications for evolutionary genomics of archaea.
Makarova KS; Sorokin AV; Novichkov PS; Wolf YI; Koonin EV
Biol Direct; 2007 Nov; 2():33. PubMed ID: 18042280
[TBL] [Abstract][Full Text] [Related]
12. Comparative genomics of defense systems in archaea and bacteria.
Makarova KS; Wolf YI; Koonin EV
Nucleic Acids Res; 2013 Apr; 41(8):4360-77. PubMed ID: 23470997
[TBL] [Abstract][Full Text] [Related]
13. Impact of Homologous Recombination on the Evolution of Prokaryotic Core Genomes.
González-Torres P; Rodríguez-Mateos F; Antón J; Gabaldón T
mBio; 2019 Jan; 10(1):. PubMed ID: 30670614
[TBL] [Abstract][Full Text] [Related]
14. Genomics of bacteria and archaea: the emerging dynamic view of the prokaryotic world.
Koonin EV; Wolf YI
Nucleic Acids Res; 2008 Dec; 36(21):6688-719. PubMed ID: 18948295
[TBL] [Abstract][Full Text] [Related]
15. En route to a genome-based classification of Archaea and Bacteria?
Klenk HP; Göker M
Syst Appl Microbiol; 2010 Jun; 33(4):175-82. PubMed ID: 20409658
[TBL] [Abstract][Full Text] [Related]
16. Recovery of nearly 8,000 metagenome-assembled genomes substantially expands the tree of life.
Parks DH; Rinke C; Chuvochina M; Chaumeil PA; Woodcroft BJ; Evans PN; Hugenholtz P; Tyson GW
Nat Microbiol; 2017 Nov; 2(11):1533-1542. PubMed ID: 28894102
[TBL] [Abstract][Full Text] [Related]
17. A phylogeny-driven genomic encyclopaedia of Bacteria and Archaea.
Wu D; Hugenholtz P; Mavromatis K; Pukall R; Dalin E; Ivanova NN; Kunin V; Goodwin L; Wu M; Tindall BJ; Hooper SD; Pati A; Lykidis A; Spring S; Anderson IJ; D'haeseleer P; Zemla A; Singer M; Lapidus A; Nolan M; Copeland A; Han C; Chen F; Cheng JF; Lucas S; Kerfeld C; Lang E; Gronow S; Chain P; Bruce D; Rubin EM; Kyrpides NC; Klenk HP; Eisen JA
Nature; 2009 Dec; 462(7276):1056-60. PubMed ID: 20033048
[TBL] [Abstract][Full Text] [Related]
18. Two fundamentally different classes of microbial genes.
Wolf YI; Makarova KS; Lobkovsky AE; Koonin EV
Nat Microbiol; 2016 Nov; 2():16208. PubMed ID: 27819663
[TBL] [Abstract][Full Text] [Related]
19. Prokaryotic genomes: the emerging paradigm of genome-based microbiology.
Koonin EV; Galperin MY
Curr Opin Genet Dev; 1997 Dec; 7(6):757-63. PubMed ID: 9468784
[TBL] [Abstract][Full Text] [Related]
20. Evolution of mosaic operons by horizontal gene transfer and gene displacement in situ.
Omelchenko MV; Makarova KS; Wolf YI; Rogozin IB; Koonin EV
Genome Biol; 2003; 4(9):R55. PubMed ID: 12952534
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]
