These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.
3. De novo assembly and phasing of a Korean human genome. Seo JS; Rhie A; Kim J; Lee S; Sohn MH; Kim CU; Hastie A; Cao H; Yun JY; Kim J; Kuk J; Park GH; Kim J; Ryu H; Kim J; Roh M; Baek J; Hunkapiller MW; Korlach J; Shin JY; Kim C Nature; 2016 Oct; 538(7624):243-247. PubMed ID: 27706134 [TBL] [Abstract][Full Text] [Related]
7. A simple procedure for directly obtaining haplotype sequences of diploid genomes. Noyes HA; Daly D; Goodhead I; Kay S; Kemp SJ; Kenny J; Saccheri I; Schnabel RD; Taylor JF; Hall N BMC Genomics; 2015 Aug; 16(1):642. PubMed ID: 26311067 [TBL] [Abstract][Full Text] [Related]
8. Assessment of human diploid genome assembly with 10x Linked-Reads data. Zhang L; Zhou X; Weng Z; Sidow A Gigascience; 2019 Nov; 8(11):. PubMed ID: 31769805 [TBL] [Abstract][Full Text] [Related]
9. Evaluation of GRCh38 and de novo haploid genome assemblies demonstrates the enduring quality of the reference assembly. Schneider VA; Graves-Lindsay T; Howe K; Bouk N; Chen HC; Kitts PA; Murphy TD; Pruitt KD; Thibaud-Nissen F; Albracht D; Fulton RS; Kremitzki M; Magrini V; Markovic C; McGrath S; Steinberg KM; Auger K; Chow W; Collins J; Harden G; Hubbard T; Pelan S; Simpson JT; Threadgold G; Torrance J; Wood JM; Clarke L; Koren S; Boitano M; Peluso P; Li H; Chin CS; Phillippy AM; Durbin R; Wilson RK; Flicek P; Eichler EE; Church DM Genome Res; 2017 May; 27(5):849-864. PubMed ID: 28396521 [TBL] [Abstract][Full Text] [Related]
10. Efficient hybrid de novo assembly of human genomes with WENGAN. Di Genova A; Buena-Atienza E; Ossowski S; Sagot MF Nat Biotechnol; 2021 Apr; 39(4):422-430. PubMed ID: 33318652 [TBL] [Abstract][Full Text] [Related]
11. Comprehensive variation discovery and recovery of missing sequence in the pig genome using multiple de novo assemblies. Li M; Chen L; Tian S; Lin Y; Tang Q; Zhou X; Li D; Yeung CKL; Che T; Jin L; Fu Y; Ma J; Wang X; Jiang A; Lan J; Pan Q; Liu Y; Luo Z; Guo Z; Liu H; Zhu L; Shuai S; Tang G; Zhao J; Jiang Y; Bai L; Zhang S; Mai M; Li C; Wang D; Gu Y; Wang G; Lu H; Li Y; Zhu H; Li Z; Li M; Gladyshev VN; Jiang Z; Zhao S; Wang J; Li R; Li X Genome Res; 2017 May; 27(5):865-874. PubMed ID: 27646534 [TBL] [Abstract][Full Text] [Related]
12. Detection and correction of false segmental duplications caused by genome mis-assembly. Kelley DR; Salzberg SL Genome Biol; 2010; 11(3):R28. PubMed ID: 20219098 [TBL] [Abstract][Full Text] [Related]
13. Subset selection of high-depth next generation sequencing reads for de novo genome assembly using MapReduce framework. Fang CH; Chang YJ; Chung WC; Hsieh PH; Lin CY; Ho JM BMC Genomics; 2015; 16 Suppl 12(Suppl 12):S9. PubMed ID: 26678408 [TBL] [Abstract][Full Text] [Related]
14. Fully Phased Sequence of a Diploid Human Genome Determined Soifer L; Fong NL; Yi N; Ireland AT; Lam I; Sooknah M; Paw JS; Peluso P; Concepcion GT; Rank D; Hastie AR; Jojic V; Ruby JG; Botstein D; Roy MA G3 (Bethesda); 2020 Sep; 10(9):2911-2925. PubMed ID: 32631951 [TBL] [Abstract][Full Text] [Related]
15. Hybrid assembly of the large and highly repetitive genome of Zimin AV; Puiu D; Luo MC; Zhu T; Koren S; Marçais G; Yorke JA; Dvořák J; Salzberg SL Genome Res; 2017 May; 27(5):787-792. PubMed ID: 28130360 [TBL] [Abstract][Full Text] [Related]
16. Phased Diploid Genome Assemblies for Three Strains of Hamlin JAP; Dias GB; Bergman CM; Bensasson D G3 (Bethesda); 2019 Nov; 9(11):3547-3554. PubMed ID: 31540974 [TBL] [Abstract][Full Text] [Related]
17. dnAQET: a framework to compute a consolidated metric for benchmarking quality of de novo assemblies. Yavas G; Hong H; Xiao W BMC Genomics; 2019 Sep; 20(1):706. PubMed ID: 31510940 [TBL] [Abstract][Full Text] [Related]
18. Anchored pseudo-de novo assembly of human genomes identifies extensive sequence variation from unmapped sequence reads. Faber-Hammond JJ; Brown KH Hum Genet; 2016 Jul; 135(7):727-40. PubMed ID: 27061184 [TBL] [Abstract][Full Text] [Related]
19. BAC sequencing using pooled methods. Saski CA; Feltus FA; Parida L; Haiminen N Methods Mol Biol; 2015; 1227():55-67. PubMed ID: 25239741 [TBL] [Abstract][Full Text] [Related]
20. ABySS 2.0: resource-efficient assembly of large genomes using a Bloom filter. Jackman SD; Vandervalk BP; Mohamadi H; Chu J; Yeo S; Hammond SA; Jahesh G; Khan H; Coombe L; Warren RL; Birol I Genome Res; 2017 May; 27(5):768-777. PubMed ID: 28232478 [TBL] [Abstract][Full Text] [Related] [Next] [New Search]