These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.


BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

524 related articles for article (PubMed ID: 28381613)

  • 21. Chromosome-scale scaffolding of de novo genome assemblies based on chromatin interactions.
    Burton JN; Adey A; Patwardhan RP; Qiu R; Kitzman JO; Shendure J
    Nat Biotechnol; 2013 Dec; 31(12):1119-25. PubMed ID: 24185095
    [TBL] [Abstract][Full Text] [Related]  

  • 22. A graph-based approach to diploid genome assembly.
    Garg S; Rautiainen M; Novak AM; Garrison E; Durbin R; Marschall T
    Bioinformatics; 2018 Jul; 34(13):i105-i114. PubMed ID: 29949989
    [TBL] [Abstract][Full Text] [Related]  

  • 23. OSLay: optimal syntenic layout of unfinished assemblies.
    Richter DC; Schuster SC; Huson DH
    Bioinformatics; 2007 Jul; 23(13):1573-9. PubMed ID: 17463020
    [TBL] [Abstract][Full Text] [Related]  

  • 24. Challenges and advances for transcriptome assembly in non-model species.
    Ungaro A; Pech N; Martin JF; McCairns RJS; Mévy JP; Chappaz R; Gilles A
    PLoS One; 2017; 12(9):e0185020. PubMed ID: 28931057
    [TBL] [Abstract][Full Text] [Related]  

  • 25. The diploid genome sequence of an individual human.
    Levy S; Sutton G; Ng PC; Feuk L; Halpern AL; Walenz BP; Axelrod N; Huang J; Kirkness EF; Denisov G; Lin Y; MacDonald JR; Pang AW; Shago M; Stockwell TB; Tsiamouri A; Bafna V; Bansal V; Kravitz SA; Busam DA; Beeson KY; McIntosh TC; Remington KA; Abril JF; Gill J; Borman J; Rogers YH; Frazier ME; Scherer SW; Strausberg RL; Venter JC
    PLoS Biol; 2007 Sep; 5(10):e254. PubMed ID: 17803354
    [TBL] [Abstract][Full Text] [Related]  

  • 26. Comparisons of de novo transcriptome assemblers in diploid and polyploid species using peanut (Arachis spp.) RNA-Seq data.
    Chopra R; Burow G; Farmer A; Mudge J; Simpson CE; Burow MD
    PLoS One; 2014; 9(12):e115055. PubMed ID: 25551607
    [TBL] [Abstract][Full Text] [Related]  

  • 27. SLIQ: simple linear inequalities for efficient contig scaffolding.
    Roy RS; Chen KC; Sengupta AM; Schliep A
    J Comput Biol; 2012 Oct; 19(10):1162-75. PubMed ID: 23057825
    [TBL] [Abstract][Full Text] [Related]  

  • 28. Transcriptome sequencing in an ecologically important tree species: assembly, annotation, and marker discovery.
    Parchman TL; Geist KS; Grahnen JA; Benkman CW; Buerkle CA
    BMC Genomics; 2010 Mar; 11():180. PubMed ID: 20233449
    [TBL] [Abstract][Full Text] [Related]  

  • 29. Methods for assembling reads and producing contigs.
    Orlandini V; Fondi M; Fani R
    Methods Mol Biol; 2015; 1231():151-61. PubMed ID: 25343864
    [TBL] [Abstract][Full Text] [Related]  

  • 30. Mapping contigs using CONTIGuator.
    Galardini M; Mengoni A; Bazzicalupo M
    Methods Mol Biol; 2015; 1231():163-76. PubMed ID: 25343865
    [TBL] [Abstract][Full Text] [Related]  

  • 31. The genome of flax (Linum usitatissimum) assembled de novo from short shotgun sequence reads.
    Wang Z; Hobson N; Galindo L; Zhu S; Shi D; McDill J; Yang L; Hawkins S; Neutelings G; Datla R; Lambert G; Galbraith DW; Grassa CJ; Geraldes A; Cronk QC; Cullis C; Dash PK; Kumar PA; Cloutier S; Sharpe AG; Wong GK; Wang J; Deyholos MK
    Plant J; 2012 Nov; 72(3):461-73. PubMed ID: 22757964
    [TBL] [Abstract][Full Text] [Related]  

  • 32. Visualization and quality assessment of de novo genome assemblies.
    Riba-Grognuz O; Keller L; Falquet L; Xenarios I; Wurm Y
    Bioinformatics; 2011 Dec; 27(24):3425-6. PubMed ID: 21994228
    [TBL] [Abstract][Full Text] [Related]  

  • 33. Safe and Complete Contig Assembly Through Omnitigs.
    Tomescu AI; Medvedev P
    J Comput Biol; 2017 Jun; 24(6):590-602. PubMed ID: 27749096
    [TBL] [Abstract][Full Text] [Related]  

  • 34. Positional bias in variant calls against draft reference assemblies.
    Briskine RV; Shimizu KK
    BMC Genomics; 2017 Mar; 18(1):263. PubMed ID: 28351369
    [TBL] [Abstract][Full Text] [Related]  

  • 35. One chromosome, one contig: complete microbial genomes from long-read sequencing and assembly.
    Koren S; Phillippy AM
    Curr Opin Microbiol; 2015 Feb; 23():110-20. PubMed ID: 25461581
    [TBL] [Abstract][Full Text] [Related]  

  • 36. HGA: de novo genome assembly method for bacterial genomes using high coverage short sequencing reads.
    Al-Okaily AA
    BMC Genomics; 2016 Mar; 17():193. PubMed ID: 26945881
    [TBL] [Abstract][Full Text] [Related]  

  • 37. Whole genome sequencing.
    Ng PC; Kirkness EF
    Methods Mol Biol; 2010; 628():215-26. PubMed ID: 20238084
    [TBL] [Abstract][Full Text] [Related]  

  • 38. metaSPAdes: a new versatile metagenomic assembler.
    Nurk S; Meleshko D; Korobeynikov A; Pevzner PA
    Genome Res; 2017 May; 27(5):824-834. PubMed ID: 28298430
    [TBL] [Abstract][Full Text] [Related]  

  • 39. HapSolo: an optimization approach for removing secondary haplotigs during diploid genome assembly and scaffolding.
    Solares EA; Tao Y; Long AD; Gaut BS
    BMC Bioinformatics; 2021 Jan; 22(1):9. PubMed ID: 33407090
    [TBL] [Abstract][Full Text] [Related]  

  • 40. Characterization of 954 bovine full-CDS cDNA sequences.
    Harhay GP; Sonstegard TS; Keele JW; Heaton MP; Clawson ML; Snelling WM; Wiedmann RT; Van Tassell CP; Smith TP
    BMC Genomics; 2005 Nov; 6():166. PubMed ID: 16305752
    [TBL] [Abstract][Full Text] [Related]  

    [Previous]   [Next]    [New Search]
    of 27.