78 related articles for article (PubMed ID: 28388445)
1. Parallel antibody germline gene and haplotype analyses support the validity of immunoglobulin germline gene inference and discovery.
Kirik U; Greiff L; Levander F; Ohlin M
Mol Immunol; 2017 Jul; 87():12-22. PubMed ID: 28388445
[TBL] [Abstract][Full Text] [Related]
2. Poorly Expressed Alleles of Several Human Immunoglobulin Heavy Chain Variable Genes are Common in the Human Population.
Ohlin M
Front Immunol; 2020; 11():603980. PubMed ID: 33717051
[TBL] [Abstract][Full Text] [Related]
3. Computational Inference, Validation, and Analysis of 5'UTR-Leader Sequences of Alleles of Immunoglobulin Heavy Chain Variable Genes.
Huang Y; Thörnqvist L; Ohlin M
Front Immunol; 2021; 12():730105. PubMed ID: 34671351
[TBL] [Abstract][Full Text] [Related]
4. Mosaic deletion patterns of the human antibody heavy chain gene locus shown by Bayesian haplotyping.
Gidoni M; Snir O; Peres A; Polak P; Lindeman I; Mikocziova I; Sarna VK; Lundin KEA; Clouser C; Vigneault F; Collins AM; Sollid LM; Yaari G
Nat Commun; 2019 Feb; 10(1):628. PubMed ID: 30733445
[TBL] [Abstract][Full Text] [Related]
5. Inferred Allelic Variants of Immunoglobulin Receptor Genes: A System for Their Evaluation, Documentation, and Naming.
Ohlin M; Scheepers C; Corcoran M; Lees WD; Busse CE; Bagnara D; Thörnqvist L; Bürckert JP; Jackson KJL; Ralph D; Schramm CA; Marthandan N; Breden F; Scott J; Matsen Iv FA; Greiff V; Yaari G; Kleinstein SH; Christley S; Sherkow JS; Kossida S; Lefranc MP; van Zelm MC; Watson CT; Collins AM
Front Immunol; 2019; 10():435. PubMed ID: 30936866
[TBL] [Abstract][Full Text] [Related]
6. High-Quality Library Preparation for NGS-Based Immunoglobulin Germline Gene Inference and Repertoire Expression Analysis.
Vázquez Bernat N; Corcoran M; Hardt U; Kaduk M; Phad GE; Martin M; Karlsson Hedestam GB
Front Immunol; 2019; 10():660. PubMed ID: 31024532
[TBL] [Abstract][Full Text] [Related]
7. AIRR-C IG Reference Sets: curated sets of immunoglobulin heavy and light chain germline genes.
Collins AM; Ohlin M; Corcoran M; Heather JM; Ralph D; Law M; Martínez-Barnetche J; Ye J; Richardson E; Gibson WS; Rodriguez OL; Peres A; Yaari G; Watson CT; Lees WD
Front Immunol; 2023; 14():1330153. PubMed ID: 38406579
[TBL] [Abstract][Full Text] [Related]
8. Estimating Copy Number and Allelic Variation at the Immunoglobulin Heavy Chain Locus Using Short Reads.
Luo S; Yu JA; Song YS
PLoS Comput Biol; 2016 Sep; 12(9):e1005117. PubMed ID: 27632220
[TBL] [Abstract][Full Text] [Related]
9. Change-O: a toolkit for analyzing large-scale B cell immunoglobulin repertoire sequencing data.
Gupta NT; Vander Heiden JA; Uduman M; Gadala-Maria D; Yaari G; Kleinstein SH
Bioinformatics; 2015 Oct; 31(20):3356-8. PubMed ID: 26069265
[TBL] [Abstract][Full Text] [Related]
10. A Novel Framework for Characterizing Genomic Haplotype Diversity in the Human Immunoglobulin Heavy Chain Locus.
Rodriguez OL; Gibson WS; Parks T; Emery M; Powell J; Strahl M; Deikus G; Auckland K; Eichler EE; Marasco WA; Sebra R; Sharp AJ; Smith ML; Bashir A; Watson CT
Front Immunol; 2020; 11():2136. PubMed ID: 33072076
[TBL] [Abstract][Full Text] [Related]
11. Identification of Subject-Specific Immunoglobulin Alleles From Expressed Repertoire Sequencing Data.
Gadala-Maria D; Gidoni M; Marquez S; Vander Heiden JA; Kos JT; Watson CT; O'Connor KC; Yaari G; Kleinstein SH
Front Immunol; 2019; 10():129. PubMed ID: 30814994
[TBL] [Abstract][Full Text] [Related]
12. IGHV allele similarity clustering improves genotype inference from adaptive immune receptor repertoire sequencing data.
Peres A; Lees WD; Rodriguez OL; Lee NY; Polak P; Hope R; Kedmi M; Collins AM; Ohlin M; Kleinstein SH; Watson CT; Yaari G
Nucleic Acids Res; 2023 Sep; 51(16):e86. PubMed ID: 37548401
[TBL] [Abstract][Full Text] [Related]
13. ImmunoTyper-SR: A computational approach for genotyping immunoglobulin heavy chain variable genes using short-read data.
Ford MKB; Hari A; Rodriguez O; Xu J; Lack J; Oguz C; Zhang Y; Weber S; Magliocco M; Barnett J; Xirasagar S; Samuel S; Imberti L; Bonfanti P; Biondi A; Dalgard CL; Chanock S; Rosen L; Holland S; Su H; Notarangelo L; ; Vishkin U; Watson CT; Sahinalp SC
Cell Syst; 2022 Oct; 13(10):808-816.e5. PubMed ID: 36265467
[TBL] [Abstract][Full Text] [Related]
14. Characterizing the dynamics of BCR repertoire from repeated influenza vaccination.
Mai G; Zhang C; Lan C; Zhang J; Wang Y; Tang K; Tang J; Zeng J; Chen Y; Cheng P; Liu S; Long H; Wen Q; Li A; Liu X; Zhang R; Xu S; Liu L; Niu Y; Yang L; Wang Y; Yin D; Sun C; Chen YQ; Shen W; Zhang Z; Du X
Emerg Microbes Infect; 2023 Dec; 12(2):2245931. PubMed ID: 37542407
[TBL] [Abstract][Full Text] [Related]
15. Population matched (pm) germline allelic variants of immunoglobulin (IG) loci: Relevance in infectious diseases and vaccination studies in human populations.
Khatri I; Berkowska MA; van den Akker EB; Teodosio C; Reinders MJT; van Dongen JJM
Genes Immun; 2021 Jul; 22(3):172-186. PubMed ID: 34120151
[TBL] [Abstract][Full Text] [Related]
16. Sequencing the functional antibody repertoire--diagnostic and therapeutic discovery.
Robinson WH
Nat Rev Rheumatol; 2015 Mar; 11(3):171-82. PubMed ID: 25536486
[TBL] [Abstract][Full Text] [Related]
17. Human immunoglobulin gene allelic variation impacts germline-targeting vaccine priming.
deCamp AC; Corcoran MM; Fulp WJ; Willis JR; Cottrell CA; Bader DLV; Kalyuzhniy O; Leggat DJ; Cohen KW; Hyrien O; Menis S; Finak G; Ballweber-Fleming L; Srikanth A; Plyler JR; Rahaman F; Lombardo A; Philiponis V; Whaley RE; Seese A; Brand J; Ruppel AM; Hoyland W; Mahoney CR; Cagigi A; Taylor A; Brown DM; Ambrozak DR; Sincomb T; Mullen TM; Maenza J; Kolokythas O; Khati N; Bethony J; Roederer M; Diemert D; Koup RA; Laufer DS; McElrath JM; McDermott AB; Karlsson Hedestam GB; Schief WR
NPJ Vaccines; 2024 Mar; 9(1):58. PubMed ID: 38467663
[TBL] [Abstract][Full Text] [Related]
18. De novo antibody discovery in human blood from full-length single B cell transcriptomics and matching haplotyped-resolved germline assemblies.
Beaulaurier J; Ly L; Duty JA; Tyer C; Stevens C; Hung CT; Sookdeo A; Drong AW; Kowdle S; Turner DJ; Juul S; Hickey S; Lee B
bioRxiv; 2024 Mar; ():. PubMed ID: 38585716
[TBL] [Abstract][Full Text] [Related]
19. Germline polymorphisms and alternative splicing of human immunoglobulin light chain genes.
Mikocziova I; Peres A; Gidoni M; Greiff V; Yaari G; Sollid LM
iScience; 2021 Oct; 24(10):103192. PubMed ID: 34693229
[TBL] [Abstract][Full Text] [Related]
20. Human immunoglobulin gene allelic variation impacts germline-targeting vaccine priming.
deCamp AC; Corcoran MM; Fulp WJ; Willis JR; Cottrell CA; Bader DLV; Kalyuzhniy O; Leggat DJ; Cohen KW; Hyrien O; Menis S; Finak G; Ballweber-Fleming L; Srikanth A; Plyler JR; Rahaman F; Lombardo A; Philiponis V; Whaley RE; Seese A; Brand J; Ruppel AM; Hoyland W; Mahoney CR; Cagigi A; Taylor A; Brown DM; Ambrozak DR; Sincomb T; Mullen TM; Maenza J; Kolokythas O; Khati N; Bethony J; Roederer M; Diemert D; Koup RA; Laufer DS; McElrath JM; McDermott AB; Hedestam GBK; Schief WR
medRxiv; 2023 Mar; ():. PubMed ID: 36993183
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]
