133 related articles for article (PubMed ID: 28392367)
1. Six GU-rich (6GU
Takeda JI; Masuda A; Ohno K
Gene; 2017 Jun; 618():57-64. PubMed ID: 28392367
[TBL] [Abstract][Full Text] [Related]
2. Position-specific binding of FUS to nascent RNA regulates mRNA length.
Masuda A; Takeda J; Okuno T; Okamoto T; Ohkawara B; Ito M; Ishigaki S; Sobue G; Ohno K
Genes Dev; 2015 May; 29(10):1045-57. PubMed ID: 25995189
[TBL] [Abstract][Full Text] [Related]
3. Leveraging cross-link modification events in CLIP-seq for motif discovery.
Bahrami-Samani E; Penalva LO; Smith AD; Uren PJ
Nucleic Acids Res; 2015 Jan; 43(1):95-103. PubMed ID: 25505146
[TBL] [Abstract][Full Text] [Related]
4. The Solution Structure of FUS Bound to RNA Reveals a Bipartite Mode of RNA Recognition with Both Sequence and Shape Specificity.
Loughlin FE; Lukavsky PJ; Kazeeva T; Reber S; Hock EM; Colombo M; Von Schroetter C; Pauli P; Cléry A; Mühlemann O; Polymenidou M; Ruepp MD; Allain FH
Mol Cell; 2019 Feb; 73(3):490-504.e6. PubMed ID: 30581145
[TBL] [Abstract][Full Text] [Related]
5. FUS-mediated regulation of alternative RNA processing in neurons: insights from global transcriptome analysis.
Masuda A; Takeda J; Ohno K
Wiley Interdiscip Rev RNA; 2016 May; 7(3):330-40. PubMed ID: 26822113
[TBL] [Abstract][Full Text] [Related]
6. Widespread binding of FUS along nascent RNA regulates alternative splicing in the brain.
Rogelj B; Easton LE; Bogu GK; Stanton LW; Rot G; Curk T; Zupan B; Sugimoto Y; Modic M; Haberman N; Tollervey J; Fujii R; Takumi T; Shaw CE; Ule J
Sci Rep; 2012; 2():603. PubMed ID: 22934129
[TBL] [Abstract][Full Text] [Related]
7. tRIP-seq reveals repression of premature polyadenylation by co-transcriptional FUS-U1 snRNP assembly.
Masuda A; Kawachi T; Takeda JI; Ohkawara B; Ito M; Ohno K
EMBO Rep; 2020 May; 21(5):e49890. PubMed ID: 32189459
[TBL] [Abstract][Full Text] [Related]
8. Nucleic acid-binding specificity of human FUS protein.
Wang X; Schwartz JC; Cech TR
Nucleic Acids Res; 2015 Sep; 43(15):7535-43. PubMed ID: 26150427
[TBL] [Abstract][Full Text] [Related]
9. Computational analysis of CLIP-seq data.
Uhl M; Houwaart T; Corrado G; Wright PR; Backofen R
Methods; 2017 Apr; 118-119():60-72. PubMed ID: 28254606
[TBL] [Abstract][Full Text] [Related]
10. RNA-protein binding motifs mining with a new hybrid deep learning based cross-domain knowledge integration approach.
Pan X; Shen HB
BMC Bioinformatics; 2017 Feb; 18(1):136. PubMed ID: 28245811
[TBL] [Abstract][Full Text] [Related]
11. Identification of RNA-RBP Interactions in Subcellular Compartments by CLIP-Seq.
Sahadevan S; Pérez-Berlanga M; Polymenidou M
Methods Mol Biol; 2022; 2428():305-323. PubMed ID: 35171488
[TBL] [Abstract][Full Text] [Related]
12. Position-dependent FUS-RNA interactions regulate alternative splicing events and transcriptions.
Ishigaki S; Masuda A; Fujioka Y; Iguchi Y; Katsuno M; Shibata A; Urano F; Sobue G; Ohno K
Sci Rep; 2012; 2():529. PubMed ID: 22829983
[TBL] [Abstract][Full Text] [Related]
13. A combined sequence and structure based method for discovering enriched motifs in RNA from in vivo binding data.
Polishchuk M; Paz I; Kohen R; Mesika R; Yakhini Z; Mandel-Gutfreund Y
Methods; 2017 Apr; 118-119():73-81. PubMed ID: 28274760
[TBL] [Abstract][Full Text] [Related]
14. Identification of high-confidence RNA regulatory elements by combinatorial classification of RNA-protein binding sites.
Li YE; Xiao M; Shi B; Yang YT; Wang D; Wang F; Marcia M; Lu ZJ
Genome Biol; 2017 Sep; 18(1):169. PubMed ID: 28886744
[TBL] [Abstract][Full Text] [Related]
15. Bayesian hidden Markov models to identify RNA-protein interaction sites in PAR-CLIP.
Yun J; Wang T; Xiao G
Biometrics; 2014 Jun; 70(2):430-40. PubMed ID: 24571656
[TBL] [Abstract][Full Text] [Related]
16. Transcriptome-Wide Mapping of Protein-RNA Interactions.
Bi X; Shen X
Methods Mol Biol; 2020; 2161():161-173. PubMed ID: 32681512
[TBL] [Abstract][Full Text] [Related]
17. Residue-by-Residue View of In Vitro FUS Granules that Bind the C-Terminal Domain of RNA Polymerase II.
Burke KA; Janke AM; Rhine CL; Fawzi NL
Mol Cell; 2015 Oct; 60(2):231-41. PubMed ID: 26455390
[TBL] [Abstract][Full Text] [Related]
18. Optimization of PAR-CLIP for transcriptome-wide identification of binding sites of RNA-binding proteins.
Garzia A; Meyer C; Morozov P; Sajek M; Tuschl T
Methods; 2017 Apr; 118-119():24-40. PubMed ID: 27765618
[TBL] [Abstract][Full Text] [Related]
19. Mapping in vivo protein-RNA interactions at single-nucleotide resolution from HITS-CLIP data.
Zhang C; Darnell RB
Nat Biotechnol; 2011 Jun; 29(7):607-14. PubMed ID: 21633356
[TBL] [Abstract][Full Text] [Related]
20. ssHMM: extracting intuitive sequence-structure motifs from high-throughput RNA-binding protein data.
Heller D; Krestel R; Ohler U; Vingron M; Marsico A
Nucleic Acids Res; 2017 Nov; 45(19):11004-11018. PubMed ID: 28977546
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]