175 related articles for article (PubMed ID: 28402873)
1. SAXS-Oriented Ensemble Refinement of Flexible Biomolecules.
Cheng P; Peng J; Zhang Z
Biophys J; 2017 Apr; 112(7):1295-1301. PubMed ID: 28402873
[TBL] [Abstract][Full Text] [Related]
2. Characterization of protein flexibility using small-angle x-ray scattering and amplified collective motion simulations.
Wen B; Peng J; Zuo X; Gong Q; Zhang Z
Biophys J; 2014 Aug; 107(4):956-64. PubMed ID: 25140431
[TBL] [Abstract][Full Text] [Related]
3. Methods for using new conceptual tools and parameters to assess RNA structure by small-angle X-ray scattering.
Reyes FE; Schwartz CR; Tainer JA; Rambo RP
Methods Enzymol; 2014; 549():235-63. PubMed ID: 25432752
[TBL] [Abstract][Full Text] [Related]
4. Determining Atomistic SAXS Models of Tri-Ubiquitin Chains from Bayesian Analysis of Accelerated Molecular Dynamics Simulations.
Bowerman S; Rana ASJB; Rice A; Pham GH; Strieter ER; Wereszczynski J
J Chem Theory Comput; 2017 Jun; 13(6):2418-2429. PubMed ID: 28482663
[TBL] [Abstract][Full Text] [Related]
5. Exploring the Energy Landscape of Riboswitches Using Collective Variables Based on Tertiary Contacts.
Prajapati JD; Onuchic JN; Sanbonmatsu KY
J Mol Biol; 2022 Sep; 434(18):167788. PubMed ID: 35963460
[TBL] [Abstract][Full Text] [Related]
6. Conformational states of Zika virus non-structural protein 3 determined by molecular dynamics simulations with small-angle X-Ray scattering data.
Zhu G; Pan A; Grüber G; Lu L
Prog Biophys Mol Biol; 2019 May; 143():13-19. PubMed ID: 30291845
[TBL] [Abstract][Full Text] [Related]
7. Structure and flexibility within proteins as identified through small angle X-ray scattering.
Pelikan M; Hura GL; Hammel M
Gen Physiol Biophys; 2009 Jun; 28(2):174-89. PubMed ID: 19592714
[TBL] [Abstract][Full Text] [Related]
8. Structural characterization of a flexible two-domain protein in solution using small angle X-ray scattering and NMR data.
Lemak A; Wu B; Yee A; Houliston S; Lee HW; Gutmanas A; Fang X; Garcia M; Semesi A; Wang YX; Prestegard JH; Arrowsmith CH
Structure; 2014 Dec; 22(12):1862-1874. PubMed ID: 25456817
[TBL] [Abstract][Full Text] [Related]
9. Analysis of Functional Dynamics of Modular Multidomain Proteins by SAXS and NMR.
Thompson MK; Ehlinger AC; Chazin WJ
Methods Enzymol; 2017; 592():49-76. PubMed ID: 28668130
[TBL] [Abstract][Full Text] [Related]
10. Extracting time series matching a small-angle X-ray scattering profile from trajectories of molecular dynamics simulations.
Shimizu M; Okuda A; Morishima K; Inoue R; Sato N; Yunoki Y; Urade R; Sugiyama M
Sci Rep; 2022 Jun; 12(1):9970. PubMed ID: 35705644
[TBL] [Abstract][Full Text] [Related]
11. Combined Small-Angle X-ray and Neutron Scattering Restraints in Molecular Dynamics Simulations.
Chen PC; Shevchuk R; Strnad FM; Lorenz C; Karge L; Gilles R; Stadler AM; Hennig J; Hub JS
J Chem Theory Comput; 2019 Aug; 15(8):4687-4698. PubMed ID: 31251056
[TBL] [Abstract][Full Text] [Related]
12. Application of SAXS for the Structural Characterization of IDPs.
Kachala M; Valentini E; Svergun DI
Adv Exp Med Biol; 2015; 870():261-89. PubMed ID: 26387105
[TBL] [Abstract][Full Text] [Related]
13. Bayesian inference of protein ensembles from SAXS data.
Antonov LD; Olsson S; Boomsma W; Hamelryck T
Phys Chem Chem Phys; 2016 Feb; 18(8):5832-8. PubMed ID: 26548662
[TBL] [Abstract][Full Text] [Related]
14. Idiosyncratically tuned switching behavior of riboswitch aptamer domains revealed by comparative small-angle X-ray scattering analysis.
Baird NJ; Ferré-D'Amaré AR
RNA; 2010 Mar; 16(3):598-609. PubMed ID: 20106958
[TBL] [Abstract][Full Text] [Related]
15. Structural analysis of intrinsically disordered proteins by small-angle X-ray scattering.
Bernadó P; Svergun DI
Mol Biosyst; 2012 Jan; 8(1):151-67. PubMed ID: 21947276
[TBL] [Abstract][Full Text] [Related]
16. Structural characterization of gephyrin by AFM and SAXS reveals a mixture of compact and extended states.
Sander B; Tria G; Shkumatov AV; Kim EY; Grossmann JG; Tessmer I; Svergun DI; Schindelin H
Acta Crystallogr D Biol Crystallogr; 2013 Oct; 69(Pt 10):2050-60. PubMed ID: 24100323
[TBL] [Abstract][Full Text] [Related]
17. Coarse-Grained Molecular Modeling of the Solution Structure Ensemble of Dengue Virus Nonstructural Protein 5 with Small-Angle X-ray Scattering Intensity.
Zhu G; Saw WG; Nalaparaju A; Grüber G; Lu L
J Phys Chem B; 2017 Mar; 121(10):2252-2264. PubMed ID: 28224788
[TBL] [Abstract][Full Text] [Related]
18. Analysis of riboswitch structure and ligand binding using small-angle X-ray scattering (SAXS).
Baird NJ; Ferré-D'Amaré AR
Methods Mol Biol; 2014; 1103():211-25. PubMed ID: 24318897
[TBL] [Abstract][Full Text] [Related]
19. Determination of Protein Structural Ensembles by Hybrid-Resolution SAXS Restrained Molecular Dynamics.
Paissoni C; Jussupow A; Camilloni C
J Chem Theory Comput; 2020 Apr; 16(4):2825-2834. PubMed ID: 32119546
[TBL] [Abstract][Full Text] [Related]
20. Bayesian inference of protein conformational ensembles from limited structural data.
Potrzebowski W; Trewhella J; Andre I
PLoS Comput Biol; 2018 Dec; 14(12):e1006641. PubMed ID: 30557358
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]