These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.


BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

193 related articles for article (PubMed ID: 28431131)

  • 41. Friend, an integrated analytical front-end application for bioinformatics.
    Abyzov A; Errami M; Leslin CM; Ilyin VA
    Bioinformatics; 2005 Sep; 21(18):3677-8. PubMed ID: 16076889
    [TBL] [Abstract][Full Text] [Related]  

  • 42. FoldX accurate structural protein-DNA binding prediction using PADA1 (Protein Assisted DNA Assembly 1).
    Blanco JD; Radusky L; Climente-González H; Serrano L
    Nucleic Acids Res; 2018 May; 46(8):3852-3863. PubMed ID: 29608705
    [TBL] [Abstract][Full Text] [Related]  

  • 43. eF-site and PDBjViewer: database and viewer for protein functional sites.
    Kinoshita K; Nakamura H
    Bioinformatics; 2004 May; 20(8):1329-30. PubMed ID: 14871866
    [TBL] [Abstract][Full Text] [Related]  

  • 44. PROMPT: a protein mapping and comparison tool.
    Schmidt T; Frishman D
    BMC Bioinformatics; 2006 Jul; 7():331. PubMed ID: 16817977
    [TBL] [Abstract][Full Text] [Related]  

  • 45. CSDBase: an interactive database for cold shock domain-containing proteins and the bacterial cold shock response.
    Weber MH; Fricke I; Doll N; Marahiel MA
    Nucleic Acids Res; 2002 Jan; 30(1):375-8. PubMed ID: 11752341
    [TBL] [Abstract][Full Text] [Related]  

  • 46. An affinity-structure database of helix-turn-helix: DNA complexes with a universal coordinate system.
    AlQuraishi M; Tang S; Xia X
    BMC Bioinformatics; 2015 Nov; 16():390. PubMed ID: 26586237
    [TBL] [Abstract][Full Text] [Related]  

  • 47. The GeneAround GO viewer.
    Tanoue J; Yoshikawa M; Uemura S
    Bioinformatics; 2002 Dec; 18(12):1705-6. PubMed ID: 12490464
    [TBL] [Abstract][Full Text] [Related]  

  • 48. Searching for likeness in a database of macromolecular complexes.
    Van Voorst JR; Finzel BC
    J Chem Inf Model; 2013 Oct; 53(10):2634-47. PubMed ID: 24047445
    [TBL] [Abstract][Full Text] [Related]  

  • 49. Protein-DNA interactions: A structural analysis.
    Jones S; van Heyningen P; Berman HM; Thornton JM
    J Mol Biol; 1999 Apr; 287(5):877-96. PubMed ID: 10222198
    [TBL] [Abstract][Full Text] [Related]  

  • 50. PDB-wide collection of binding data: current status of the PDBbind database.
    Liu Z; Li Y; Han L; Li J; Liu J; Zhao Z; Nie W; Liu Y; Wang R
    Bioinformatics; 2015 Feb; 31(3):405-12. PubMed ID: 25301850
    [TBL] [Abstract][Full Text] [Related]  

  • 51. Amino acid-base interactions: a three-dimensional analysis of protein-DNA interactions at an atomic level.
    Luscombe NM; Laskowski RA; Thornton JM
    Nucleic Acids Res; 2001 Jul; 29(13):2860-74. PubMed ID: 11433033
    [TBL] [Abstract][Full Text] [Related]  

  • 52. Covalent trapping of protein-DNA complexes.
    Verdine GL; Norman DP
    Annu Rev Biochem; 2003; 72():337-66. PubMed ID: 14527324
    [TBL] [Abstract][Full Text] [Related]  

  • 53. MOLVIE: an interactive visualization environment for molecular structures.
    Sun H; Li M; Xu Y
    Comput Methods Programs Biomed; 2003 May; 71(1):85-90. PubMed ID: 12725967
    [TBL] [Abstract][Full Text] [Related]  

  • 54. GOLEM: an interactive graph-based gene-ontology navigation and analysis tool.
    Sealfon RS; Hibbs MA; Huttenhower C; Myers CL; Troyanskaya OG
    BMC Bioinformatics; 2006 Oct; 7():443. PubMed ID: 17032457
    [TBL] [Abstract][Full Text] [Related]  

  • 55. RNAscape: geometric mapping and customizable visualization of RNA structure.
    Mitra R; Cohen AS; Rohs R
    Nucleic Acids Res; 2024 Jul; 52(W1):W354-W361. PubMed ID: 38630617
    [TBL] [Abstract][Full Text] [Related]  

  • 56. Finding optimal interaction interface alignments between biological complexes.
    Cui X; Naveed H; Gao X
    Bioinformatics; 2015 Jun; 31(12):i133-41. PubMed ID: 26072475
    [TBL] [Abstract][Full Text] [Related]  

  • 57. Rearrangement of side-chains in a Zif268 mutant highlights the complexities of zinc finger-DNA recognition.
    Miller JC; Pabo CO
    J Mol Biol; 2001 Oct; 313(2):309-15. PubMed ID: 11800559
    [TBL] [Abstract][Full Text] [Related]  

  • 58. WEBnm@: a web application for normal mode analyses of proteins.
    Hollup SM; Salensminde G; Reuter N
    BMC Bioinformatics; 2005 Mar; 6():52. PubMed ID: 15762993
    [TBL] [Abstract][Full Text] [Related]  

  • 59. The MiSink Plugin: Cytoscape as a graphical interface to the Database of Interacting Proteins.
    Salwinski L; Eisenberg D
    Bioinformatics; 2007 Aug; 23(16):2193-5. PubMed ID: 17553858
    [TBL] [Abstract][Full Text] [Related]  

  • 60. DBBP: database of binding pairs in protein-nucleic acid interactions.
    Park B; Kim H; Han K
    BMC Bioinformatics; 2014; 15 Suppl 15(Suppl 15):S5. PubMed ID: 25474259
    [TBL] [Abstract][Full Text] [Related]  

    [Previous]   [Next]    [New Search]
    of 10.