820 related articles for article (PubMed ID: 28448138)
1. The IDP-Specific Force Field ff14IDPSFF Improves the Conformer Sampling of Intrinsically Disordered Proteins.
Song D; Luo R; Chen HF
J Chem Inf Model; 2017 May; 57(5):1166-1178. PubMed ID: 28448138
[TBL] [Abstract][Full Text] [Related]
2. Order-disorder transition of intrinsically disordered kinase inducible transactivation domain of CREB.
Liu H; Guo X; Han J; Luo R; Chen HF
J Chem Phys; 2018 Jun; 148(22):225101. PubMed ID: 29907037
[TBL] [Abstract][Full Text] [Related]
3. Residue-Specific Force Field Improving the Sample of Intrinsically Disordered Proteins and Folded Proteins.
Yang S; Liu H; Zhang Y; Lu H; Chen H
J Chem Inf Model; 2019 Nov; 59(11):4793-4805. PubMed ID: 31613621
[TBL] [Abstract][Full Text] [Related]
4. Intrinsically disordered protein-specific force field CHARMM36IDPSFF.
Liu H; Song D; Lu H; Luo R; Chen HF
Chem Biol Drug Des; 2018 Oct; 92(4):1722-1735. PubMed ID: 29808548
[TBL] [Abstract][Full Text] [Related]
5. ff14IDPs force field improving the conformation sampling of intrinsically disordered proteins.
Song D; Wang W; Ye W; Ji D; Luo R; Chen HF
Chem Biol Drug Des; 2017 Jan; 89(1):5-15. PubMed ID: 27484738
[TBL] [Abstract][Full Text] [Related]
6. Computational Studies of Intrinsically Disordered Proteins.
Duong VT; Chen Z; Thapa MT; Luo R
J Phys Chem B; 2018 Nov; 122(46):10455-10469. PubMed ID: 30372613
[TBL] [Abstract][Full Text] [Related]
7. Test and Evaluation of ff99IDPs Force Field for Intrinsically Disordered Proteins.
Ye W; Ji D; Wang W; Luo R; Chen HF
J Chem Inf Model; 2015 May; 55(5):1021-9. PubMed ID: 25919886
[TBL] [Abstract][Full Text] [Related]
8. New force field on modeling intrinsically disordered proteins.
Wang W; Ye W; Jiang C; Luo R; Chen HF
Chem Biol Drug Des; 2014 Sep; 84(3):253-69. PubMed ID: 24589355
[TBL] [Abstract][Full Text] [Related]
9. Comparison and Evaluation of Force Fields for Intrinsically Disordered Proteins.
Rahman MU; Rehman AU; Liu H; Chen HF
J Chem Inf Model; 2020 Oct; 60(10):4912-4923. PubMed ID: 32816485
[TBL] [Abstract][Full Text] [Related]
10. Secondary structures transition of tau protein with intrinsically disordered proteins specific force field.
Dan A; Chen HF
Chem Biol Drug Des; 2019 Mar; 93(3):242-253. PubMed ID: 30259679
[TBL] [Abstract][Full Text] [Related]
11. Well-Balanced Force Field
Zhang Y; Liu H; Yang S; Luo R; Chen HF
J Chem Theory Comput; 2019 Dec; 15(12):6769-6780. PubMed ID: 31657215
[TBL] [Abstract][Full Text] [Related]
12. Extensive evaluation of environment-specific force field for ordered and disordered proteins.
Cui X; Liu H; Rehman AU; Chen HF
Phys Chem Chem Phys; 2021 Jun; 23(21):12127-12136. PubMed ID: 34032235
[TBL] [Abstract][Full Text] [Related]
13. Extensive tests and evaluation of the CHARMM36IDPSFF force field for intrinsically disordered proteins and folded proteins.
Liu H; Song D; Zhang Y; Yang S; Luo R; Chen HF
Phys Chem Chem Phys; 2019 Oct; 21(39):21918-21931. PubMed ID: 31552948
[TBL] [Abstract][Full Text] [Related]
14. Development of Charge-Augmented Three-Point Water Model (CAIPi3P) for Accurate Simulations of Intrinsically Disordered Proteins.
de Souza JV; Zariquiey FS; Bronowska AK
Int J Mol Sci; 2020 Aug; 21(17):. PubMed ID: 32859072
[TBL] [Abstract][Full Text] [Related]
15. Polarizable Force Field of Intrinsically Disordered Proteins with CMAP and Reweighting Optimization.
Cui X; Liu H; Chen HF
J Chem Inf Model; 2022 Oct; 62(20):4970-4982. PubMed ID: 36178373
[TBL] [Abstract][Full Text] [Related]
16. Modeling structural interconversion in Alzheimers' amyloid beta peptide with classical and intrinsically disordered protein force fields.
Wu KY; Doan D; Medrano M; Chang CA
J Biomol Struct Dyn; 2022; 40(20):10005-10022. PubMed ID: 34152264
[TBL] [Abstract][Full Text] [Related]
17. Molecular dynamics simulations of an α-synuclein NAC domain fragment with a ff14IDPSFF IDP-specific force field suggest β-sheet intermediate states of fibrillation.
Privat C; Madurga S; Mas F; Rubio-Martinez J
Phys Chem Chem Phys; 2022 Aug; 24(31):18841-18853. PubMed ID: 35912724
[TBL] [Abstract][Full Text] [Related]
18. Performance evaluation of the balanced force field ff03CMAP for intrinsically disordered and ordered proteins.
Jiang Y; Chen HF
Phys Chem Chem Phys; 2022 Dec; 24(48):29870-29881. PubMed ID: 36468450
[TBL] [Abstract][Full Text] [Related]
19. Recent advances in atomic molecular dynamics simulation of intrinsically disordered proteins.
Wang W
Phys Chem Chem Phys; 2021 Jan; 23(2):777-784. PubMed ID: 33355572
[TBL] [Abstract][Full Text] [Related]
20. Balanced Solvent Model for Intrinsically Disordered and Ordered Proteins.
Mu J; Pan Z; Chen HF
J Chem Inf Model; 2021 Oct; 61(10):5141-5151. PubMed ID: 34546059
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]
