These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.


BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

322 related articles for article (PubMed ID: 28451969)

  • 1. From Gene Annotation to Function Prediction for Metagenomics.
    Sharifi F; Ye Y
    Methods Mol Biol; 2017; 1611():27-34. PubMed ID: 28451969
    [TBL] [Abstract][Full Text] [Related]  

  • 2. COGNIZER: A Framework for Functional Annotation of Metagenomic Datasets.
    Bose T; Haque MM; Reddy C; Mande SS
    PLoS One; 2015; 10(11):e0142102. PubMed ID: 26561344
    [TBL] [Abstract][Full Text] [Related]  

  • 3. GHOSTX: A Fast Sequence Homology Search Tool for Functional Annotation of Metagenomic Data.
    Suzuki S; Ishida T; Ohue M; Kakuta M; Akiyama Y
    Methods Mol Biol; 2017; 1611():15-25. PubMed ID: 28451968
    [TBL] [Abstract][Full Text] [Related]  

  • 4. MetaEuk-sensitive, high-throughput gene discovery, and annotation for large-scale eukaryotic metagenomics.
    Levy Karin E; Mirdita M; Söding J
    Microbiome; 2020 Apr; 8(1):48. PubMed ID: 32245390
    [TBL] [Abstract][Full Text] [Related]  

  • 5. GRASPx: efficient homolog-search of short peptide metagenome database through simultaneous alignment and assembly.
    Zhong C; Yang Y; Yooseph S
    BMC Bioinformatics; 2016 Aug; 17 Suppl 8(Suppl 8):283. PubMed ID: 27585568
    [TBL] [Abstract][Full Text] [Related]  

  • 6. MetaCAA: A clustering-aided methodology for efficient assembly of metagenomic datasets.
    Reddy RM; Mohammed MH; Mande SS
    Genomics; 2014; 103(2-3):161-8. PubMed ID: 24607570
    [TBL] [Abstract][Full Text] [Related]  

  • 7. A multi-source domain annotation pipeline for quantitative metagenomic and metatranscriptomic functional profiling.
    Ugarte A; Vicedomini R; Bernardes J; Carbone A
    Microbiome; 2018 Aug; 6(1):149. PubMed ID: 30153857
    [TBL] [Abstract][Full Text] [Related]  

  • 8. geneRFinder: gene finding in distinct metagenomic data complexities.
    Silva R; Padovani K; Góes F; Alves R
    BMC Bioinformatics; 2021 Feb; 22(1):87. PubMed ID: 33632132
    [TBL] [Abstract][Full Text] [Related]  

  • 9. MG-RAST, a Metagenomics Service for Analysis of Microbial Community Structure and Function.
    Keegan KP; Glass EM; Meyer F
    Methods Mol Biol; 2016; 1399():207-33. PubMed ID: 26791506
    [TBL] [Abstract][Full Text] [Related]  

  • 10. Contigs directed gene annotation (ConDiGA) for accurate protein sequence database construction in metaproteomics.
    Wu E; Mallawaarachchi V; Zhao J; Yang Y; Liu H; Wang X; Shen C; Lin Y; Qiao L
    Microbiome; 2024 Mar; 12(1):58. PubMed ID: 38504332
    [TBL] [Abstract][Full Text] [Related]  

  • 11. A Massively Parallel Sequence Similarity Search for Metagenomic Sequencing Data.
    Kakuta M; Suzuki S; Izawa K; Ishida T; Akiyama Y
    Int J Mol Sci; 2017 Oct; 18(10):. PubMed ID: 29019934
    [TBL] [Abstract][Full Text] [Related]  

  • 12. MIPE: A metagenome-based community structure explorer and SSU primer evaluation tool.
    Zou B; Li J; Zhou Q; Quan ZX
    PLoS One; 2017; 12(3):e0174609. PubMed ID: 28350876
    [TBL] [Abstract][Full Text] [Related]  

  • 13. Comprehensive Functional Annotation of Metagenomes and Microbial Genomes Using a Deep Learning-Based Method.
    Maranga M; Szczerbiak P; Bezshapkin V; Gligorijevic V; Chandler C; Bonneau R; Xavier RJ; Vatanen T; Kosciolek T
    mSystems; 2023 Apr; 8(2):e0117822. PubMed ID: 37010293
    [TBL] [Abstract][Full Text] [Related]  

  • 14. Stitching gene fragments with a network matching algorithm improves gene assembly for metagenomics.
    Wu YW; Rho M; Doak TG; Ye Y
    Bioinformatics; 2012 Sep; 28(18):i363-i369. PubMed ID: 22962453
    [TBL] [Abstract][Full Text] [Related]  

  • 15. Accurate binning of metagenomic contigs via automated clustering sequences using information of genomic signatures and marker genes.
    Lin HH; Liao YC
    Sci Rep; 2016 Apr; 6():24175. PubMed ID: 27067514
    [TBL] [Abstract][Full Text] [Related]  

  • 16. FMAP: Functional Mapping and Analysis Pipeline for metagenomics and metatranscriptomics studies.
    Kim J; Kim MS; Koh AY; Xie Y; Zhan X
    BMC Bioinformatics; 2016 Oct; 17(1):420. PubMed ID: 27724866
    [TBL] [Abstract][Full Text] [Related]  

  • 17. Probabilistic inference of biochemical reactions in microbial communities from metagenomic sequences.
    Jiao D; Ye Y; Tang H
    PLoS Comput Biol; 2013; 9(3):e1002981. PubMed ID: 23555216
    [TBL] [Abstract][Full Text] [Related]  

  • 18. Accurate Binning of Metagenomic Contigs Using Composition, Coverage, and Assembly Graphs.
    Mallawaarachchi V; Lin Y
    J Comput Biol; 2022 Dec; 29(12):1357-1376. PubMed ID: 36367700
    [TBL] [Abstract][Full Text] [Related]  

  • 19. Quantifying and comparing bacterial growth dynamics in multiple metagenomic samples.
    Gao Y; Li H
    Nat Methods; 2018 Dec; 15(12):1041-1044. PubMed ID: 30420687
    [TBL] [Abstract][Full Text] [Related]  

  • 20. MetaSAMS--a novel software platform for taxonomic classification, functional annotation and comparative analysis of metagenome datasets.
    Zakrzewski M; Bekel T; Ander C; Pühler A; Rupp O; Stoye J; Schlüter A; Goesmann A
    J Biotechnol; 2013 Aug; 167(2):156-65. PubMed ID: 23026555
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 17.