BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

165 related articles for article (PubMed ID: 28451982)

  • 1. Multi-Algorithm Particle Simulations with Spatiocyte.
    Arjunan SNV; Takahashi K
    Methods Mol Biol; 2017; 1611():219-236. PubMed ID: 28451982
    [TBL] [Abstract][Full Text] [Related]  

  • 2. pSpatiocyte: a high-performance simulator for intracellular reaction-diffusion systems.
    Arjunan SNV; Miyauchi A; Iwamoto K; Takahashi K
    BMC Bioinformatics; 2020 Jan; 21(1):33. PubMed ID: 31996129
    [TBL] [Abstract][Full Text] [Related]  

  • 3. MONALISA for stochastic simulations of Petri net models of biochemical systems.
    Balazki P; Lindauer K; Einloft J; Ackermann J; Koch I
    BMC Bioinformatics; 2015 Jul; 16():215. PubMed ID: 26156221
    [TBL] [Abstract][Full Text] [Related]  

  • 4. Spatial and stochastic cellular modeling with the Smoldyn simulator.
    Andrews SS
    Methods Mol Biol; 2012; 804():519-42. PubMed ID: 22144170
    [TBL] [Abstract][Full Text] [Related]  

  • 5. URDME: a modular framework for stochastic simulation of reaction-transport processes in complex geometries.
    Drawert B; Engblom S; Hellander A
    BMC Syst Biol; 2012 Jun; 6():76. PubMed ID: 22727185
    [TBL] [Abstract][Full Text] [Related]  

  • 6. Numerical Approach to Spatial Deterministic-Stochastic Models Arising in Cell Biology.
    Schaff JC; Gao F; Li Y; Novak IL; Slepchenko BM
    PLoS Comput Biol; 2016 Dec; 12(12):e1005236. PubMed ID: 27959915
    [TBL] [Abstract][Full Text] [Related]  

  • 7. Meredys, a multi-compartment reaction-diffusion simulator using multistate realistic molecular complexes.
    Tolle DP; Le Novère N
    BMC Syst Biol; 2010 Mar; 4():24. PubMed ID: 20233406
    [TBL] [Abstract][Full Text] [Related]  

  • 8. Stochastic reaction-diffusion algorithms for macromolecular crowding.
    Sturrock M
    Phys Biol; 2016 Jun; 13(3):036010. PubMed ID: 27346297
    [TBL] [Abstract][Full Text] [Related]  

  • 9. ML-Space: Hybrid Spatial Gillespie and Particle Simulation of Multi-Level Rule-Based Models in Cell Biology.
    Bittig AT; Uhrmacher AM
    IEEE/ACM Trans Comput Biol Bioinform; 2017; 14(6):1339-1349. PubMed ID: 27514063
    [TBL] [Abstract][Full Text] [Related]  

  • 10. Smoldyn: particle-based simulation with rule-based modeling, improved molecular interaction and a library interface.
    Andrews SS
    Bioinformatics; 2017 Mar; 33(5):710-717. PubMed ID: 28365760
    [TBL] [Abstract][Full Text] [Related]  

  • 11. Lattice Microbes: high-performance stochastic simulation method for the reaction-diffusion master equation.
    Roberts E; Stone JE; Luthey-Schulten Z
    J Comput Chem; 2013 Jan; 34(3):245-55. PubMed ID: 23007888
    [TBL] [Abstract][Full Text] [Related]  

  • 12. Multiscale reaction-diffusion simulations with Smoldyn.
    Robinson M; Andrews SS; Erban R
    Bioinformatics; 2015 Jul; 31(14):2406-8. PubMed ID: 25788627
    [TBL] [Abstract][Full Text] [Related]  

  • 13. Cellware--a multi-algorithmic software for computational systems biology.
    Dhar P; Meng TC; Somani S; Ye L; Sairam A; Chitre M; Hao Z; Sakharkar K
    Bioinformatics; 2004 May; 20(8):1319-21. PubMed ID: 14871872
    [TBL] [Abstract][Full Text] [Related]  

  • 14. pSSAlib: The partial-propensity stochastic chemical network simulator.
    Ostrenko O; Incardona P; Ramaswamy R; Brusch L; Sbalzarini IF
    PLoS Comput Biol; 2017 Dec; 13(12):e1005865. PubMed ID: 29206229
    [TBL] [Abstract][Full Text] [Related]  

  • 15. eGFRD in all dimensions.
    Sokolowski TR; Paijmans J; Bossen L; Miedema T; Wehrens M; Becker NB; Kaizu K; Takahashi K; Dogterom M; Ten Wolde PR
    J Chem Phys; 2019 Feb; 150(5):054108. PubMed ID: 30736681
    [TBL] [Abstract][Full Text] [Related]  

  • 16. Stochastic simulation GUI for biochemical networks.
    Vallabhajosyula RR; Sauro HM
    Bioinformatics; 2007 Jul; 23(14):1859-61. PubMed ID: 17586553
    [TBL] [Abstract][Full Text] [Related]  

  • 17. A hybrid method for micro-mesoscopic stochastic simulation of reaction-diffusion systems.
    Sayyidmousavi A; Rohlf K; Ilie S
    Math Biosci; 2019 Jun; 312():23-32. PubMed ID: 30998936
    [TBL] [Abstract][Full Text] [Related]  

  • 18. Parallel Stochastic Discrete Event Simulation of Calcium Dynamics in Neuron.
    Patoary MNI; Tropper C; McDougal RA; Lin Z; Lytton WW
    IEEE/ACM Trans Comput Biol Bioinform; 2019; 16(3):1007-1019. PubMed ID: 28961124
    [TBL] [Abstract][Full Text] [Related]  

  • 19. Algorithm for Mesoscopic Advection-Diffusion.
    Noel A; Makrakis D
    IEEE Trans Nanobioscience; 2018 Oct; 17(4):543-554. PubMed ID: 30371383
    [TBL] [Abstract][Full Text] [Related]  

  • 20. Stochastic Simulation Service: Bridging the Gap between the Computational Expert and the Biologist.
    Drawert B; Hellander A; Bales B; Banerjee D; Bellesia G; Daigle BJ; Douglas G; Gu M; Gupta A; Hellander S; Horuk C; Nath D; Takkar A; Wu S; Lötstedt P; Krintz C; Petzold LR
    PLoS Comput Biol; 2016 Dec; 12(12):e1005220. PubMed ID: 27930676
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 9.