These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.


BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

148 related articles for article (PubMed ID: 28453611)

  • 1. modSaRa: a computationally efficient R package for CNV identification.
    Xiao F; Niu Y; Hao N; Xu Y; Jin Z; Zhang H
    Bioinformatics; 2017 Aug; 33(15):2384-2385. PubMed ID: 28453611
    [TBL] [Abstract][Full Text] [Related]  

  • 2. Modified screening and ranking algorithm for copy number variation detection.
    Xiao F; Min X; Zhang H
    Bioinformatics; 2015 May; 31(9):1341-8. PubMed ID: 25542927
    [TBL] [Abstract][Full Text] [Related]  

  • 3. An accurate and powerful method for copy number variation detection.
    Xiao F; Luo X; Hao N; Niu YS; Xiao X; Cai G; Amos CI; Zhang H
    Bioinformatics; 2019 Sep; 35(17):2891-2898. PubMed ID: 30649252
    [TBL] [Abstract][Full Text] [Related]  

  • 4. NanoStringNormCNV: pre-processing of NanoString CNV data.
    Sendorek DH; Lalonde E; Yao CQ; Sabelnykova VY; Bristow RG; Boutros PC
    Bioinformatics; 2018 Mar; 34(6):1034-1036. PubMed ID: 29112706
    [TBL] [Abstract][Full Text] [Related]  

  • 5. Canvas SPW: calling de novo copy number variants in pedigrees.
    Ivakhno S; Roller E; Colombo C; Tedder P; Cox AJ
    Bioinformatics; 2018 Feb; 34(3):516-518. PubMed ID: 29028893
    [TBL] [Abstract][Full Text] [Related]  

  • 6. PatternCNV: a versatile tool for detecting copy number changes from exome sequencing data.
    Wang C; Evans JM; Bhagwate AV; Prodduturi N; Sarangi V; Middha M; Sicotte H; Vedell PT; Hart SN; Oliver GR; Kocher JP; Maurer MJ; Novak AJ; Slager SL; Cerhan JR; Asmann YW
    Bioinformatics; 2014 Sep; 30(18):2678-80. PubMed ID: 24876377
    [TBL] [Abstract][Full Text] [Related]  

  • 7. FishingCNV: a graphical software package for detecting rare copy number variations in exome-sequencing data.
    Shi Y; Majewski J
    Bioinformatics; 2013 Jun; 29(11):1461-2. PubMed ID: 23539306
    [TBL] [Abstract][Full Text] [Related]  

  • 8. COKGEN: a software for the identification of rare copy number variation from SNP microarrays.
    Yavaş G; Koyutürk M; Ozsoyoğlu M; Gould MP; Laframboise T
    Pac Symp Biocomput; 2010; ():371-82. PubMed ID: 19908389
    [TBL] [Abstract][Full Text] [Related]  

  • 9. cnAnalysis450k: an R package for comparative analysis of 450k/EPIC Illumina methylation array derived copy number data.
    Knoll M; Debus J; Abdollahi A
    Bioinformatics; 2017 Aug; 33(15):2266-2272. PubMed ID: 28379302
    [TBL] [Abstract][Full Text] [Related]  

  • 10. CNVfilteR: an R/Bioconductor package to identify false positives produced by germline NGS CNV detection tools.
    Moreno-Cabrera JM; Del Valle J; Castellanos E; Feliubadaló L; Pineda M; Serra E; Capellá G; Lázaro C; Gel B
    Bioinformatics; 2021 Nov; 37(22):4227-4229. PubMed ID: 33983414
    [TBL] [Abstract][Full Text] [Related]  

  • 11. Exome sequencing-based copy-number variation and loss of heterozygosity detection: ExomeCNV.
    Sathirapongsasuti JF; Lee H; Horst BA; Brunner G; Cochran AJ; Binder S; Quackenbush J; Nelson SF
    Bioinformatics; 2011 Oct; 27(19):2648-54. PubMed ID: 21828086
    [TBL] [Abstract][Full Text] [Related]  

  • 12. Robust regression analysis of copy number variation data based on a univariate score.
    Satten GA; Allen AS; Ikeda M; Mulle JG; Warren ST
    PLoS One; 2014; 9(2):e86272. PubMed ID: 24516529
    [TBL] [Abstract][Full Text] [Related]  

  • 13. GAPIT: genome association and prediction integrated tool.
    Lipka AE; Tian F; Wang Q; Peiffer J; Li M; Bradbury PJ; Gore MA; Buckler ES; Zhang Z
    Bioinformatics; 2012 Sep; 28(18):2397-9. PubMed ID: 22796960
    [TBL] [Abstract][Full Text] [Related]  

  • 14. An evaluation of copy number variation detection tools for cancer using whole exome sequencing data.
    Zare F; Dow M; Monteleone N; Hosny A; Nabavi S
    BMC Bioinformatics; 2017 May; 18(1):286. PubMed ID: 28569140
    [TBL] [Abstract][Full Text] [Related]  

  • 15. gkmSVM: an R package for gapped-kmer SVM.
    Ghandi M; Mohammad-Noori M; Ghareghani N; Lee D; Garraway L; Beer MA
    Bioinformatics; 2016 Jul; 32(14):2205-7. PubMed ID: 27153639
    [TBL] [Abstract][Full Text] [Related]  

  • 16. Novel features and enhancements in BioBin, a tool for the biologically inspired binning and association analysis of rare variants.
    Basile AO; Byrska-Bishop M; Wallace J; Frase AT; Ritchie MD
    Bioinformatics; 2018 Feb; 34(3):527-529. PubMed ID: 28968757
    [TBL] [Abstract][Full Text] [Related]  

  • 17. QuasR: quantification and annotation of short reads in R.
    Gaidatzis D; Lerch A; Hahne F; Stadler MB
    Bioinformatics; 2015 Apr; 31(7):1130-2. PubMed ID: 25417205
    [TBL] [Abstract][Full Text] [Related]  

  • 18. synbreed: a framework for the analysis of genomic prediction data using R.
    Wimmer V; Albrecht T; Auinger HJ; Schön CC
    Bioinformatics; 2012 Aug; 28(15):2086-7. PubMed ID: 22689388
    [TBL] [Abstract][Full Text] [Related]  

  • 19. Inferring relative proportions of DNA variants from sequencing electropherograms.
    Carr IM; Robinson JI; Dimitriou R; Markham AF; Morgan AW; Bonthron DT
    Bioinformatics; 2009 Dec; 25(24):3244-50. PubMed ID: 19819885
    [TBL] [Abstract][Full Text] [Related]  

  • 20. gsrc: an R package for genome structure rearrangement calling.
    Grandke F; Snowdon R; Samans B
    Bioinformatics; 2017 Feb; 33(4):545-546. PubMed ID: 27797758
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 8.