391 related articles for article (PubMed ID: 28453624)
1. Inferring Rates and Length-Distributions of Indels Using Approximate Bayesian Computation.
Levy Karin E; Shkedy D; Ashkenazy H; Cartwright RA; Pupko T
Genome Biol Evol; 2017 May; 9(5):1280-1294. PubMed ID: 28453624
[TBL] [Abstract][Full Text] [Related]
2. SpartaABC: a web server to simulate sequences with indel parameters inferred using an approximate Bayesian computation algorithm.
Ashkenazy H; Levy Karin E; Mertens Z; Cartwright RA; Pupko T
Nucleic Acids Res; 2017 Jul; 45(W1):W453-W457. PubMed ID: 28460062
[TBL] [Abstract][Full Text] [Related]
3. A Probabilistic Model for Indel Evolution: Differentiating Insertions from Deletions.
Loewenthal G; Rapoport D; Avram O; Moshe A; Wygoda E; Itzkovitch A; Israeli O; Azouri D; Cartwright RA; Mayrose I; Pupko T
Mol Biol Evol; 2021 Dec; 38(12):5769-5781. PubMed ID: 34469521
[TBL] [Abstract][Full Text] [Related]
4. Bayesian coestimation of phylogeny and sequence alignment.
Lunter G; Miklós I; Drummond A; Jensen JL; Hein J
BMC Bioinformatics; 2005 Apr; 6():83. PubMed ID: 15804354
[TBL] [Abstract][Full Text] [Related]
5. A Simulation-Based Approach to Statistical Alignment.
Levy Karin E; Ashkenazy H; Hein J; Pupko T
Syst Biol; 2019 Mar; 68(2):252-266. PubMed ID: 30239957
[TBL] [Abstract][Full Text] [Related]
6. Statistical framework to determine indel-length distribution.
Wygoda E; Loewenthal G; Moshe A; Alburquerque M; Mayrose I; Pupko T
Bioinformatics; 2024 Feb; 40(2):. PubMed ID: 38269647
[TBL] [Abstract][Full Text] [Related]
7. Measuring Accelerated Rates of Insertions and Deletions Independent of Rates of Nucleotide Substitution.
Navarro Leija O; Varghese S; Han MV
J Mol Evol; 2016 Oct; 83(3-4):137-146. PubMed ID: 27770175
[TBL] [Abstract][Full Text] [Related]
8. Inferring Indel Parameters using a Simulation-based Approach.
Levy Karin E; Rabin A; Ashkenazy H; Shkedy D; Avram O; Cartwright RA; Pupko T
Genome Biol Evol; 2015 Nov; 7(12):3226-38. PubMed ID: 26537226
[TBL] [Abstract][Full Text] [Related]
9. On optimal selection of summary statistics for approximate Bayesian computation.
Nunes MA; Balding DJ
Stat Appl Genet Mol Biol; 2010; 9():Article34. PubMed ID: 20887273
[TBL] [Abstract][Full Text] [Related]
10. Dindel: accurate indel calls from short-read data.
Albers CA; Lunter G; MacArthur DG; McVean G; Ouwehand WH; Durbin R
Genome Res; 2011 Jun; 21(6):961-73. PubMed ID: 20980555
[TBL] [Abstract][Full Text] [Related]
11. Kernel approximate Bayesian computation in population genetic inferences.
Nakagome S; Fukumizu K; Mano S
Stat Appl Genet Mol Biol; 2013 Dec; 12(6):667-78. PubMed ID: 24150124
[TBL] [Abstract][Full Text] [Related]
12. Indel reliability in indel-based phylogenetic inference.
Ashkenazy H; Cohen O; Pupko T; Huchon D
Genome Biol Evol; 2014 Nov; 6(12):3199-209. PubMed ID: 25409663
[TBL] [Abstract][Full Text] [Related]
13. Approximate Bayesian computation (ABC) gives exact results under the assumption of model error.
Wilkinson RD
Stat Appl Genet Mol Biol; 2013 May; 12(2):129-41. PubMed ID: 23652634
[TBL] [Abstract][Full Text] [Related]
14. General continuous-time Markov model of sequence evolution via insertions/deletions: are alignment probabilities factorable?
Ezawa K
BMC Bioinformatics; 2016 Aug; 17():304. PubMed ID: 27638547
[TBL] [Abstract][Full Text] [Related]
15. Sequence alignments and pair hidden Markov models using evolutionary history.
Knudsen B; Miyamoto MM
J Mol Biol; 2003 Oct; 333(2):453-60. PubMed ID: 14529629
[TBL] [Abstract][Full Text] [Related]
16. ABCtoolbox: a versatile toolkit for approximate Bayesian computations.
Wegmann D; Leuenberger C; Neuenschwander S; Excoffier L
BMC Bioinformatics; 2010 Mar; 11():116. PubMed ID: 20202215
[TBL] [Abstract][Full Text] [Related]
17. Evolutionary inference via the Poisson Indel Process.
Bouchard-Côté A; Jordan MI
Proc Natl Acad Sci U S A; 2013 Jan; 110(4):1160-6. PubMed ID: 23275296
[TBL] [Abstract][Full Text] [Related]
18. General continuous-time Markov model of sequence evolution via insertions/deletions: local alignment probability computation.
Ezawa K
BMC Bioinformatics; 2016 Sep; 17(1):397. PubMed ID: 27677569
[TBL] [Abstract][Full Text] [Related]
19. indel-Seq-Gen: a new protein family simulator incorporating domains, motifs, and indels.
Strope CL; Scott SD; Moriyama EN
Mol Biol Evol; 2007 Mar; 24(3):640-9. PubMed ID: 17158778
[TBL] [Abstract][Full Text] [Related]
20. AABC: approximate approximate Bayesian computation for inference in population-genetic models.
Buzbas EO; Rosenberg NA
Theor Popul Biol; 2015 Feb; 99():31-42. PubMed ID: 25261426
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]
