These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.


BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

164 related articles for article (PubMed ID: 28453653)

  • 1. The Bologna Annotation Resource (BAR 3.0): improving protein functional annotation.
    Profiti G; Martelli PL; Casadio R
    Nucleic Acids Res; 2017 Jul; 45(W1):W285-W290. PubMed ID: 28453653
    [TBL] [Abstract][Full Text] [Related]  

  • 2. BAR-PLUS: the Bologna Annotation Resource Plus for functional and structural annotation of protein sequences.
    Piovesan D; Martelli PL; Fariselli P; Zauli A; Rossi I; Casadio R
    Nucleic Acids Res; 2011 Jul; 39(Web Server issue):W197-202. PubMed ID: 21622657
    [TBL] [Abstract][Full Text] [Related]  

  • 3. How to inherit statistically validated annotation within BAR+ protein clusters.
    Piovesan D; Martelli PL; Fariselli P; Profiti G; Zauli A; Rossi I; Casadio R
    BMC Bioinformatics; 2013; 14 Suppl 3(Suppl 3):S4. PubMed ID: 23514411
    [TBL] [Abstract][Full Text] [Related]  

  • 4. The human "magnesome": detecting magnesium binding sites on human proteins.
    Piovesan D; Profiti G; Martelli PL; Casadio R
    BMC Bioinformatics; 2012; 13 Suppl 14(Suppl 14):S10. PubMed ID: 23095498
    [TBL] [Abstract][Full Text] [Related]  

  • 5. The bologna annotation resource: a non hierarchical method for the functional and structural annotation of protein sequences relying on a comparative large-scale genome analysis.
    Bartoli L; Montanucci L; Fronza R; Martelli PL; Fariselli P; Carota L; Donvito G; Maggi GP; Casadio R
    J Proteome Res; 2009 Sep; 8(9):4362-71. PubMed ID: 19552451
    [TBL] [Abstract][Full Text] [Related]  

  • 6. SUS-BAR: a database of pig proteins with statistically validated structural and functional annotation.
    Piovesan D; Profiti G; Martelli PL; Fariselli P; Fontanesi L; Casadio R
    Database (Oxford); 2013; 2013():bat065. PubMed ID: 24065691
    [TBL] [Abstract][Full Text] [Related]  

  • 7. Uniclust databases of clustered and deeply annotated protein sequences and alignments.
    Mirdita M; von den Driesch L; Galiez C; Martin MJ; Söding J; Steinegger M
    Nucleic Acids Res; 2017 Jan; 45(D1):D170-D176. PubMed ID: 27899574
    [TBL] [Abstract][Full Text] [Related]  

  • 8. SIFTS: updated Structure Integration with Function, Taxonomy and Sequences resource allows 40-fold increase in coverage of structure-based annotations for proteins.
    Dana JM; Gutmanas A; Tyagi N; Qi G; O'Donovan C; Martin M; Velankar S
    Nucleic Acids Res; 2019 Jan; 47(D1):D482-D489. PubMed ID: 30445541
    [TBL] [Abstract][Full Text] [Related]  

  • 9. Identification of subfamily-specific sites based on active sites modeling and clustering.
    de Melo-Minardi RC; Bastard K; Artiguenave F
    Bioinformatics; 2010 Dec; 26(24):3075-82. PubMed ID: 20980272
    [TBL] [Abstract][Full Text] [Related]  

  • 10. SSMap: a new UniProt-PDB mapping resource for the curation of structural-related information in the UniProt/Swiss-Prot Knowledgebase.
    David FP; Yip YL
    BMC Bioinformatics; 2008 Sep; 9():391. PubMed ID: 18811932
    [TBL] [Abstract][Full Text] [Related]  

  • 11. BENZ WS: the Bologna ENZyme Web Server for four-level EC number annotation.
    Baldazzi D; Savojardo C; Martelli PL; Casadio R
    Nucleic Acids Res; 2021 Jul; 49(W1):W60-W66. PubMed ID: 33963861
    [TBL] [Abstract][Full Text] [Related]  

  • 12. CATH FunFHMMer web server: protein functional annotations using functional family assignments.
    Das S; Sillitoe I; Lee D; Lees JG; Dawson NL; Ward J; Orengo CA
    Nucleic Acids Res; 2015 Jul; 43(W1):W148-53. PubMed ID: 25964299
    [TBL] [Abstract][Full Text] [Related]  

  • 13. UniRef clusters: a comprehensive and scalable alternative for improving sequence similarity searches.
    Suzek BE; Wang Y; Huang H; McGarvey PB; Wu CH;
    Bioinformatics; 2015 Mar; 31(6):926-32. PubMed ID: 25398609
    [TBL] [Abstract][Full Text] [Related]  

  • 14. Clustering the annotation space of proteins.
    Kunin V; Ouzounis CA
    BMC Bioinformatics; 2005 Feb; 6():24. PubMed ID: 15703069
    [TBL] [Abstract][Full Text] [Related]  

  • 15. The Pfam protein families database.
    Bateman A; Birney E; Cerruti L; Durbin R; Etwiller L; Eddy SR; Griffiths-Jones S; Howe KL; Marshall M; Sonnhammer EL
    Nucleic Acids Res; 2002 Jan; 30(1):276-80. PubMed ID: 11752314
    [TBL] [Abstract][Full Text] [Related]  

  • 16. The Universal Protein Resource (UniProt): an expanding universe of protein information.
    Wu CH; Apweiler R; Bairoch A; Natale DA; Barker WC; Boeckmann B; Ferro S; Gasteiger E; Huang H; Lopez R; Magrane M; Martin MJ; Mazumder R; O'Donovan C; Redaschi N; Suzek B
    Nucleic Acids Res; 2006 Jan; 34(Database issue):D187-91. PubMed ID: 16381842
    [TBL] [Abstract][Full Text] [Related]  

  • 17. xHMMER3x2: Utilizing HMMER3's speed and HMMER2's sensitivity and specificity in the glocal alignment mode for improved large-scale protein domain annotation.
    Yap CK; Eisenhaber B; Eisenhaber F; Wong WC
    Biol Direct; 2016 Nov; 11(1):63. PubMed ID: 27894340
    [TBL] [Abstract][Full Text] [Related]  

  • 18. Mapping PDB chains to UniProtKB entries.
    Martin AC
    Bioinformatics; 2005 Dec; 21(23):4297-301. PubMed ID: 16188924
    [TBL] [Abstract][Full Text] [Related]  

  • 19. SUPFAM--a database of potential protein superfamily relationships derived by comparing sequence-based and structure-based families: implications for structural genomics and function annotation in genomes.
    Pandit SB; Gosar D; Abhiman S; Sujatha S; Dixit SS; Mhatre NS; Sowdhamini R; Srinivasan N
    Nucleic Acids Res; 2002 Jan; 30(1):289-93. PubMed ID: 11752317
    [TBL] [Abstract][Full Text] [Related]  

  • 20. Bioinformatic Identification of Rare Codon Clusters (RCCs) in HBV Genome and Evaluation of RCCs in Proteins Structure of Hepatitis B Virus.
    Mortazavi M; Zarenezhad M; Gholamzadeh S; Alavian SM; Ghorbani M; Dehghani R; Malekpour A; Meshkibaf M; Fakhrzad A
    Hepat Mon; 2016 Oct; 16(10):e39909. PubMed ID: 27882067
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 9.