106 related articles for article (PubMed ID: 28453672)
1. Primerize-2D: automated primer design for RNA multidimensional chemical mapping.
Tian S; Das R
Bioinformatics; 2017 May; 33(9):1405-1406. PubMed ID: 28453672
[TBL] [Abstract][Full Text] [Related]
2. Primerize: automated primer assembly for transcribing non-coding RNA domains.
Tian S; Yesselman JD; Cordero P; Das R
Nucleic Acids Res; 2015 Jul; 43(W1):W522-6. PubMed ID: 25999345
[TBL] [Abstract][Full Text] [Related]
3. Automated band annotation for RNA structure probing experiments with numerous capillary electrophoresis profiles.
Lee S; Kim H; Tian S; Lee T; Yoon S; Das R
Bioinformatics; 2015 Sep; 31(17):2808-15. PubMed ID: 25943472
[TBL] [Abstract][Full Text] [Related]
4. CEMAsuite: open source degenerate PCR primer design.
Lane CE; Hulgan D; O'Quinn K; Benton MG
Bioinformatics; 2015 Nov; 31(22):3688-90. PubMed ID: 26198106
[TBL] [Abstract][Full Text] [Related]
5. RNAseqViewer: visualization tool for RNA-Seq data.
Rogé X; Zhang X
Bioinformatics; 2014 Mar; 30(6):891-2. PubMed ID: 24215023
[TBL] [Abstract][Full Text] [Related]
6. ModeRNA server: an online tool for modeling RNA 3D structures.
Rother M; Milanowska K; Puton T; Jeleniewicz J; Rother K; Bujnicki JM
Bioinformatics; 2011 Sep; 27(17):2441-2. PubMed ID: 21727140
[TBL] [Abstract][Full Text] [Related]
7. An RNA Mapping DataBase for curating RNA structure mapping experiments.
Cordero P; Lucks JB; Das R
Bioinformatics; 2012 Nov; 28(22):3006-8. PubMed ID: 22976082
[TBL] [Abstract][Full Text] [Related]
8. smallWig: parallel compression of RNA-seq WIG files.
Wang Z; Weissman T; Milenkovic O
Bioinformatics; 2016 Jan; 32(2):173-80. PubMed ID: 26424856
[TBL] [Abstract][Full Text] [Related]
9. Classification of RNA structure change by 'gazing' at experimental data.
Woods CT; Laederach A
Bioinformatics; 2017 Jun; 33(11):1647-1655. PubMed ID: 28130241
[TBL] [Abstract][Full Text] [Related]
10. RNA-Redesign: a web server for fixed-backbone 3D design of RNA.
Yesselman JD; Das R
Nucleic Acids Res; 2015 Jul; 43(W1):W498-501. PubMed ID: 25964298
[TBL] [Abstract][Full Text] [Related]
11. Primer3_masker: integrating masking of template sequence with primer design software.
Kõressaar T; Lepamets M; Kaplinski L; Raime K; Andreson R; Remm M
Bioinformatics; 2018 Jun; 34(11):1937-1938. PubMed ID: 29360956
[TBL] [Abstract][Full Text] [Related]
12. PTPan--overcoming memory limitations in oligonucleotide string matching for primer/probe design.
Eissler T; Hodges CP; Meier H
Bioinformatics; 2011 Oct; 27(20):2797-805. PubMed ID: 21856736
[TBL] [Abstract][Full Text] [Related]
13. WebSTAR3D: a web server for RNA 3D structural alignment.
Holzhauser E; Ge P; Zhang S
Bioinformatics; 2016 Dec; 32(23):3673-3675. PubMed ID: 27497443
[TBL] [Abstract][Full Text] [Related]
14. Introduction on Using the FastPCR Software and the Related Java Web Tools for PCR and Oligonucleotide Assembly and Analysis.
Kalendar R; Tselykh TV; Khassenov B; Ramanculov EM
Methods Mol Biol; 2017; 1620():33-64. PubMed ID: 28540698
[TBL] [Abstract][Full Text] [Related]
15. RNA-TVcurve: a Web server for RNA secondary structure comparison based on a multi-scale similarity of its triple vector curve representation.
Li Y; Shi X; Liang Y; Xie J; Zhang Y; Ma Q
BMC Bioinformatics; 2017 Jan; 18(1):51. PubMed ID: 28109252
[TBL] [Abstract][Full Text] [Related]
16. Accurate prediction of RNA nucleotide interactions with backbone k-tree model.
Ding L; Xue X; LaMarca S; Mohebbi M; Samad A; Malmberg RL; Cai L
Bioinformatics; 2015 Aug; 31(16):2660-7. PubMed ID: 25886978
[TBL] [Abstract][Full Text] [Related]
17. Foldalign 2.5: multithreaded implementation for pairwise structural RNA alignment.
Sundfeld D; Havgaard JH; de Melo AC; Gorodkin J
Bioinformatics; 2016 Apr; 32(8):1238-40. PubMed ID: 26704597
[TBL] [Abstract][Full Text] [Related]
18. CloneAssistant 1.0: a stand-alone software for automated cloning primer design.
Shao C; Meng Y; Lv S; Zhong W; Wang Z; Chen M
J Biotechnol; 2010 Nov; 150(3):294-8. PubMed ID: 20887760
[TBL] [Abstract][Full Text] [Related]
19. INFO-RNA--a server for fast inverse RNA folding satisfying sequence constraints.
Busch A; Backofen R
Nucleic Acids Res; 2007 Jul; 35(Web Server issue):W310-3. PubMed ID: 17452349
[TBL] [Abstract][Full Text] [Related]
20. rSeqNP: a non-parametric approach for detecting differential expression and splicing from RNA-Seq data.
Shi Y; Chinnaiyan AM; Jiang H
Bioinformatics; 2015 Jul; 31(13):2222-4. PubMed ID: 25717189
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]
