106 related articles for article (PubMed ID: 28453672)
41. Metrics for rapid quality control in RNA structure probing experiments.
Choudhary K; Shih NP; Deng F; Ledda M; Li B; Aviran S
Bioinformatics; 2016 Dec; 32(23):3575-3583. PubMed ID: 27497441
[TBL] [Abstract][Full Text] [Related]
42. EBARDenovo: highly accurate de novo assembly of RNA-Seq with efficient chimera-detection.
Chu HT; Hsiao WW; Chen JC; Yeh TJ; Tsai MH; Lin H; Liu YW; Lee SA; Chen CC; Tsao TT; Kao CY
Bioinformatics; 2013 Apr; 29(8):1004-10. PubMed ID: 23457040
[TBL] [Abstract][Full Text] [Related]
43. FastPCR software for PCR, in silico PCR, and oligonucleotide assembly and analysis.
Kalendar R; Lee D; Schulman AH
Methods Mol Biol; 2014; 1116():271-302. PubMed ID: 24395370
[TBL] [Abstract][Full Text] [Related]
44. Structure clustering features on the Sfold Web server.
Chan CY; Lawrence CE; Ding Y
Bioinformatics; 2005 Oct; 21(20):3926-8. PubMed ID: 16109749
[TBL] [Abstract][Full Text] [Related]
45. RNAiFold 2.0: a web server and software to design custom and Rfam-based RNA molecules.
Garcia-Martin JA; Dotu I; Clote P
Nucleic Acids Res; 2015 Jul; 43(W1):W513-21. PubMed ID: 26019176
[TBL] [Abstract][Full Text] [Related]
46. SEQualyzer: interactive tool for quality control and exploratory analysis of high-throughput RNA structural profiling data.
Choudhary K; Ruan L; Deng F; Shih N; Aviran S
Bioinformatics; 2017 Feb; 33(3):441-443. PubMed ID: 28172632
[TBL] [Abstract][Full Text] [Related]
47. Consensus shapes: an alternative to the Sankoff algorithm for RNA consensus structure prediction.
Reeder J; Giegerich R
Bioinformatics; 2005 Sep; 21(17):3516-23. PubMed ID: 16020472
[TBL] [Abstract][Full Text] [Related]
48. iFoldRNA v2: folding RNA with constraints.
Krokhotin A; Houlihan K; Dokholyan NV
Bioinformatics; 2015 Sep; 31(17):2891-3. PubMed ID: 25910700
[TBL] [Abstract][Full Text] [Related]
49. BASIC: BCR assembly from single cells.
Canzar S; Neu KE; Tang Q; Wilson PC; Khan AA
Bioinformatics; 2017 Feb; 33(3):425-427. PubMed ID: 28172415
[TBL] [Abstract][Full Text] [Related]
50. Vfold-Pipeline: a web server for RNA 3D structure prediction from sequences.
Li J; Zhang S; Zhang D; Chen SJ
Bioinformatics; 2022 Aug; 38(16):4042-4043. PubMed ID: 35758624
[TBL] [Abstract][Full Text] [Related]
51. Set of novel tools for PCR primer design.
Gorelenkov V; Antipov A; Lejnine S; Daraselia N; Yuryev A
Biotechniques; 2001 Dec; 31(6):1326-30. PubMed ID: 11768662
[TBL] [Abstract][Full Text] [Related]
52. STITCHER: A web resource for high-throughput design of primers for overlapping PCR applications.
O'Halloran DM
Biotechniques; 2015 Jun; 58(6):325-8. PubMed ID: 26054769
[TBL] [Abstract][Full Text] [Related]
53. RNALOSS: a web server for RNA locally optimal secondary structures.
Clote P
Nucleic Acids Res; 2005 Jul; 33(Web Server issue):W600-4. PubMed ID: 15980545
[TBL] [Abstract][Full Text] [Related]
54. QGRS Mapper: a web-based server for predicting G-quadruplexes in nucleotide sequences.
Kikin O; D'Antonio L; Bagga PS
Nucleic Acids Res; 2006 Jul; 34(Web Server issue):W676-82. PubMed ID: 16845096
[TBL] [Abstract][Full Text] [Related]
55. DEsubs: an R package for flexible identification of differentially expressed subpathways using RNA-seq experiments.
Vrahatis AG; Balomenos P; Tsakalidis AK; Bezerianos A
Bioinformatics; 2016 Dec; 32(24):3844-3846. PubMed ID: 27542770
[TBL] [Abstract][Full Text] [Related]
56. Combined in vitro transcription and reverse transcription to amplify and label complex synthetic oligonucleotide probe libraries.
Murgha Y; Beliveau B; Semrau K; Schwartz D; Wu CT; Gulari E; Rouillard JM
Biotechniques; 2015 Jun; 58(6):301-7. PubMed ID: 26054766
[TBL] [Abstract][Full Text] [Related]
57. MIMEAnTo: profiling functional RNA in mutational interference mapping experiments.
Smith MR; Smyth RP; Marquet R; von Kleist M
Bioinformatics; 2016 Nov; 32(21):3369-3370. PubMed ID: 27402903
[TBL] [Abstract][Full Text] [Related]
58. 13Check_RNA: a tool to evaluate 13C chemical shift assignments of RNA.
Icazatti AA; Martin OA; Villegas M; Szleifer I; Vila JA
Bioinformatics; 2018 Dec; 34(23):4124-4126. PubMed ID: 29931233
[TBL] [Abstract][Full Text] [Related]
59. PrimerProspector: de novo design and taxonomic analysis of barcoded polymerase chain reaction primers.
Walters WA; Caporaso JG; Lauber CL; Berg-Lyons D; Fierer N; Knight R
Bioinformatics; 2011 Apr; 27(8):1159-61. PubMed ID: 21349862
[TBL] [Abstract][Full Text] [Related]
60. A conditional random fields method for RNA sequence-structure relationship modeling and conformation sampling.
Wang Z; Xu J
Bioinformatics; 2011 Jul; 27(13):i102-10. PubMed ID: 21685058
[TBL] [Abstract][Full Text] [Related]
[Previous] [Next] [New Search]
