These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.


BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

409 related articles for article (PubMed ID: 28472320)

  • 1. ChimeRScope: a novel alignment-free algorithm for fusion transcript prediction using paired-end RNA-Seq data.
    Li Y; Heavican TB; Vellichirammal NN; Iqbal J; Guda C
    Nucleic Acids Res; 2017 Jul; 45(13):e120. PubMed ID: 28472320
    [TBL] [Abstract][Full Text] [Related]  

  • 2. Identification of Fusion Transcripts from Unaligned RNA-Seq Reads Using ChimeRScope.
    Vellichirammal NN; Albahrani A; Li Y; Guda C
    Methods Mol Biol; 2020; 2079():13-25. PubMed ID: 31728959
    [TBL] [Abstract][Full Text] [Related]  

  • 3. ChimPipe: accurate detection of fusion genes and transcription-induced chimeras from RNA-seq data.
    Rodríguez-Martín B; Palumbo E; Marco-Sola S; Griebel T; Ribeca P; Alonso G; Rastrojo A; Aguado B; Guigó R; Djebali S
    BMC Genomics; 2017 Jan; 18(1):7. PubMed ID: 28049418
    [TBL] [Abstract][Full Text] [Related]  

  • 4. Discovering chimeric transcripts in paired-end RNA-seq data by using EricScript.
    Benelli M; Pescucci C; Marseglia G; Severgnini M; Torricelli F; Magi A
    Bioinformatics; 2012 Dec; 28(24):3232-9. PubMed ID: 23093608
    [TBL] [Abstract][Full Text] [Related]  

  • 5. STAR: ultrafast universal RNA-seq aligner.
    Dobin A; Davis CA; Schlesinger F; Drenkow J; Zaleski C; Jha S; Batut P; Chaisson M; Gingeras TR
    Bioinformatics; 2013 Jan; 29(1):15-21. PubMed ID: 23104886
    [TBL] [Abstract][Full Text] [Related]  

  • 6. Comprehensive evaluation of fusion transcript detection algorithms and a meta-caller to combine top performing methods in paired-end RNA-seq data.
    Liu S; Tsai WH; Ding Y; Chen R; Fang Z; Huo Z; Kim S; Ma T; Chang TY; Priedigkeit NM; Lee AV; Luo J; Wang HW; Chung IF; Tseng GC
    Nucleic Acids Res; 2016 Mar; 44(5):e47. PubMed ID: 26582927
    [TBL] [Abstract][Full Text] [Related]  

  • 7. DETECTION OF BACTERIAL SMALL TRANSCRIPTS FROM RNA-SEQ DATA: A COMPARATIVE ASSESSMENT.
    Peña-Castillo L; Grüell M; Mulligan ME; Lang AS
    Pac Symp Biocomput; 2016; 21():456-67. PubMed ID: 26776209
    [TBL] [Abstract][Full Text] [Related]  

  • 8. Robust and exact structural variation detection with paired-end and soft-clipped alignments: SoftSV compared with eight algorithms.
    Bartenhagen C; Dugas M
    Brief Bioinform; 2016 Jan; 17(1):51-62. PubMed ID: 25998133
    [TBL] [Abstract][Full Text] [Related]  

  • 9. RapMap: a rapid, sensitive and accurate tool for mapping RNA-seq reads to transcriptomes.
    Srivastava A; Sarkar H; Gupta N; Patro R
    Bioinformatics; 2016 Jun; 32(12):i192-i200. PubMed ID: 27307617
    [TBL] [Abstract][Full Text] [Related]  

  • 10. A fast detection of fusion genes from paired-end RNA-seq data.
    Vu TN; Deng W; Trac QT; Calza S; Hwang W; Pawitan Y
    BMC Genomics; 2018 Nov; 19(1):786. PubMed ID: 30382840
    [TBL] [Abstract][Full Text] [Related]  

  • 11. CSEQ-SIMULATOR: A DATA SIMULATOR FOR CLIP-SEQ EXPERIMENTS.
    Kassuhn W; Ohler U; Drewe P
    Pac Symp Biocomput; 2016; 21():433-44. PubMed ID: 26776207
    [TBL] [Abstract][Full Text] [Related]  

  • 12. FusionMap: detecting fusion genes from next-generation sequencing data at base-pair resolution.
    Ge H; Liu K; Juan T; Fang F; Newman M; Hoeck W
    Bioinformatics; 2011 Jul; 27(14):1922-8. PubMed ID: 21593131
    [TBL] [Abstract][Full Text] [Related]  

  • 13. GFusion: an Effective Algorithm to Identify Fusion Genes from Cancer RNA-Seq Data.
    Zhao J; Chen Q; Wu J; Han P; Song X
    Sci Rep; 2017 Jul; 7(1):6880. PubMed ID: 28761119
    [TBL] [Abstract][Full Text] [Related]  

  • 14. Strawberry: Fast and accurate genome-guided transcript reconstruction and quantification from RNA-Seq.
    Liu R; Dickerson J
    PLoS Comput Biol; 2017 Nov; 13(11):e1005851. PubMed ID: 29176847
    [TBL] [Abstract][Full Text] [Related]  

  • 15. LongGF: computational algorithm and software tool for fast and accurate detection of gene fusions by long-read transcriptome sequencing.
    Liu Q; Hu Y; Stucky A; Fang L; Zhong JF; Wang K
    BMC Genomics; 2020 Dec; 21(Suppl 11):793. PubMed ID: 33372596
    [TBL] [Abstract][Full Text] [Related]  

  • 16. FusionQ: a novel approach for gene fusion detection and quantification from paired-end RNA-Seq.
    Liu C; Ma J; Chang CJ; Zhou X
    BMC Bioinformatics; 2013 Jun; 14():193. PubMed ID: 23768108
    [TBL] [Abstract][Full Text] [Related]  

  • 17. Bellerophontes: an RNA-Seq data analysis framework for chimeric transcripts discovery based on accurate fusion model.
    Abate F; Acquaviva A; Paciello G; Foti C; Ficarra E; Ferrarini A; Delledonne M; Iacobucci I; Soverini S; Martinelli G; Macii E
    Bioinformatics; 2012 Aug; 28(16):2114-21. PubMed ID: 22711792
    [TBL] [Abstract][Full Text] [Related]  

  • 18. How does normalization impact RNA-seq disease diagnosis?
    Han H; Men K
    J Biomed Inform; 2018 Sep; 85():80-92. PubMed ID: 30041017
    [TBL] [Abstract][Full Text] [Related]  

  • 19. Evaluation of tools for long read RNA-seq splice-aware alignment.
    Križanovic K; Echchiki A; Roux J; Šikic M
    Bioinformatics; 2018 Mar; 34(5):748-754. PubMed ID: 29069314
    [TBL] [Abstract][Full Text] [Related]  

  • 20. Near-optimal probabilistic RNA-seq quantification.
    Bray NL; Pimentel H; Melsted P; Pachter L
    Nat Biotechnol; 2016 May; 34(5):525-7. PubMed ID: 27043002
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 21.