BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

333 related articles for article (PubMed ID: 28472485)

  • 21. Creating RNA Specific C-to-U Editase from APOBEC3A by Separation of Its Activities on DNA and RNA Substrates.
    Tang G; Xie B; Hong X; Qin H; Wang J; Huang H; Hao P; Li X
    ACS Synth Biol; 2021 May; 10(5):1106-1115. PubMed ID: 33938211
    [TBL] [Abstract][Full Text] [Related]  

  • 22. AID enzymatic activity is inversely proportional to the size of cytosine C5 orbital cloud.
    Rangam G; Schmitz KM; Cobb AJ; Petersen-Mahrt SK
    PLoS One; 2012; 7(8):e43279. PubMed ID: 22916236
    [TBL] [Abstract][Full Text] [Related]  

  • 23. Competition for DNA binding between the genome protector replication protein A and the genome modifying APOBEC3 single-stranded DNA deaminases.
    Wong L; Sami A; Chelico L
    Nucleic Acids Res; 2022 Nov; 50(21):12039-12057. PubMed ID: 36444883
    [TBL] [Abstract][Full Text] [Related]  

  • 24. Activation-induced cytidine deaminase deaminates 5-methylcytosine in DNA and is expressed in pluripotent tissues: implications for epigenetic reprogramming.
    Morgan HD; Dean W; Coker HA; Reik W; Petersen-Mahrt SK
    J Biol Chem; 2004 Dec; 279(50):52353-60. PubMed ID: 15448152
    [TBL] [Abstract][Full Text] [Related]  

  • 25. Efficient deamination of 5-methylcytidine and 5-substituted cytidine residues in DNA by human APOBEC3A cytidine deaminase.
    Suspène R; Aynaud MM; Vartanian JP; Wain-Hobson S
    PLoS One; 2013; 8(6):e63461. PubMed ID: 23840298
    [TBL] [Abstract][Full Text] [Related]  

  • 26. Mutations in human AID differentially affect its ability to deaminate cytidine and 5-methylcytidine in ssDNA substrates in vitro.
    Budzko L; Jackowiak P; Kamel K; Sarzynska J; Bujnicki JM; Figlerowicz M
    Sci Rep; 2017 Jun; 7(1):3873. PubMed ID: 28634398
    [TBL] [Abstract][Full Text] [Related]  

  • 27. Single-stranded DNA binding proteins influence APOBEC3A substrate preference.
    Brown AL; Collins CD; Thompson S; Coxon M; Mertz TM; Roberts SA
    Sci Rep; 2021 Oct; 11(1):21008. PubMed ID: 34697369
    [TBL] [Abstract][Full Text] [Related]  

  • 28. Zebrafish AID is capable of deaminating methylated deoxycytidines.
    Abdouni H; King JJ; Suliman M; Quinlan M; Fifield H; Larijani M
    Nucleic Acids Res; 2013 May; 41(10):5457-68. PubMed ID: 23585279
    [TBL] [Abstract][Full Text] [Related]  

  • 29. Visualization of uracils created by APOBEC3A using UdgX shows colocalization with RPA at stalled replication forks.
    Stewart JA; Schauer G; Bhagwat AS
    Nucleic Acids Res; 2020 Nov; 48(20):e118. PubMed ID: 33074285
    [TBL] [Abstract][Full Text] [Related]  

  • 30. Genome-wide mapping of regions preferentially targeted by the human DNA-cytosine deaminase APOBEC3A using uracil-DNA pulldown and sequencing.
    Sakhtemani R; Senevirathne V; Stewart J; Perera MLW; Pique-Regi R; Lawrence MS; Bhagwat AS
    J Biol Chem; 2019 Oct; 294(41):15037-15051. PubMed ID: 31431505
    [TBL] [Abstract][Full Text] [Related]  

  • 31. In vitro deamination of cytosine to uracil in single-stranded DNA by apolipoprotein B editing complex catalytic subunit 1 (APOBEC1).
    Petersen-Mahrt SK; Neuberger MS
    J Biol Chem; 2003 May; 278(22):19583-6. PubMed ID: 12697753
    [TBL] [Abstract][Full Text] [Related]  

  • 32. The behaviour of 5-hydroxymethylcytosine in bisulfite sequencing.
    Huang Y; Pastor WA; Shen Y; Tahiliani M; Liu DR; Rao A
    PLoS One; 2010 Jan; 5(1):e8888. PubMed ID: 20126651
    [TBL] [Abstract][Full Text] [Related]  

  • 33. Enzyme cycling contributes to efficient induction of genome mutagenesis by the cytidine deaminase APOBEC3B.
    Adolph MB; Love RP; Feng Y; Chelico L
    Nucleic Acids Res; 2017 Nov; 45(20):11925-11940. PubMed ID: 28981865
    [TBL] [Abstract][Full Text] [Related]  

  • 34. Sensitive and simultaneous determination of 5-methylcytosine and its oxidation products in genomic DNA by chemical derivatization coupled with liquid chromatography-tandem mass spectrometry analysis.
    Tang Y; Zheng SJ; Qi CB; Feng YQ; Yuan BF
    Anal Chem; 2015 Mar; 87(6):3445-52. PubMed ID: 25675106
    [TBL] [Abstract][Full Text] [Related]  

  • 35. Substrate sequence selectivity of APOBEC3A implicates intra-DNA interactions.
    Silvas TV; Hou S; Myint W; Nalivaika E; Somasundaran M; Kelch BA; Matsuo H; Kurt Yilmaz N; Schiffer CA
    Sci Rep; 2018 May; 8(1):7511. PubMed ID: 29760455
    [TBL] [Abstract][Full Text] [Related]  

  • 36. APOBEC3A deaminates transiently exposed single-strand DNA during LINE-1 retrotransposition.
    Richardson SR; Narvaiza I; Planegger RA; Weitzman MD; Moran JV
    Elife; 2014 Apr; 3():e02008. PubMed ID: 24843014
    [TBL] [Abstract][Full Text] [Related]  

  • 37. Effects of Tet-induced oxidation products of 5-methylcytosine on Dnmt1- and DNMT3a-mediated cytosine methylation.
    Ji D; Lin K; Song J; Wang Y
    Mol Biosyst; 2014 Jul; 10(7):1749-52. PubMed ID: 24789765
    [TBL] [Abstract][Full Text] [Related]  

  • 38. Characterization of the Catalytic Domain of Human APOBEC3B and the Critical Structural Role for a Conserved Methionine.
    Siriwardena SU; Guruge TA; Bhagwat AS
    J Mol Biol; 2015 Sep; 427(19):3042-55. PubMed ID: 26281709
    [TBL] [Abstract][Full Text] [Related]  

  • 39. Maintenance DNA Methyltransferase Activity in the Presence of Oxidized Forms of 5-Methylcytosine: Structural Basis for Ten Eleven Translocation-Mediated DNA Demethylation.
    Seiler CL; Fernandez J; Koerperich Z; Andersen MP; Kotandeniya D; Nguyen ME; Sham YY; Tretyakova NY
    Biochemistry; 2018 Oct; 57(42):6061-6069. PubMed ID: 30230311
    [TBL] [Abstract][Full Text] [Related]  

  • 40. Structural determinants of human APOBEC3A enzymatic and nucleic acid binding properties.
    Mitra M; Hercík K; Byeon IJ; Ahn J; Hill S; Hinchee-Rodriguez K; Singer D; Byeon CH; Charlton LM; Nam G; Heidecker G; Gronenborn AM; Levin JG
    Nucleic Acids Res; 2014 Jan; 42(2):1095-110. PubMed ID: 24163103
    [TBL] [Abstract][Full Text] [Related]  

    [Previous]   [Next]    [New Search]
    of 17.