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6. Indel sensitive and comprehensive variant/mutation detection from RNA sequencing data for precision medicine. Prodduturi N; Bhagwate A; Kocher JA; Sun Z BMC Med Genomics; 2018 Sep; 11(Suppl 3):67. PubMed ID: 30255803 [TBL] [Abstract][Full Text] [Related]
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11. CoVaCS: a consensus variant calling system. Chiara M; Gioiosa S; Chillemi G; D'Antonio M; Flati T; Picardi E; Zambelli F; Horner DS; Pesole G; Castrignanò T BMC Genomics; 2018 Feb; 19(1):120. PubMed ID: 29402227 [TBL] [Abstract][Full Text] [Related]
12. UMI-VarCal: a new UMI-based variant caller that efficiently improves low-frequency variant detection in paired-end sequencing NGS libraries. Sater V; Viailly PJ; Lecroq T; Prieur-Gaston É; Bohers É; Viennot M; Ruminy P; Dauchel H; Vera P; Jardin F Bioinformatics; 2020 May; 36(9):2718-2724. PubMed ID: 31985795 [TBL] [Abstract][Full Text] [Related]
14. RareVar: A Framework for Detecting Low-Frequency Single-Nucleotide Variants. Hao Y; Xuei X; Li L; Nakshatri H; Edenberg HJ; Liu Y J Comput Biol; 2017 Jul; 24(7):637-646. PubMed ID: 28541743 [TBL] [Abstract][Full Text] [Related]
15. VarGenius executes cohort-level DNA-seq variant calling and annotation and allows to manage the resulting data through a PostgreSQL database. Musacchia F; Ciolfi A; Mutarelli M; Bruselles A; Castello R; Pinelli M; Basu S; Banfi S; Casari G; Tartaglia M; Nigro V; BMC Bioinformatics; 2018 Dec; 19(1):477. PubMed ID: 30541431 [TBL] [Abstract][Full Text] [Related]
16. Visitor, an informatic pipeline for analysis of viral siRNA sequencing datasets. Antoniewski C Methods Mol Biol; 2011; 721():123-42. PubMed ID: 21431682 [TBL] [Abstract][Full Text] [Related]
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18. Combination of RNA- and exome sequencing: Increasing specificity for identification of somatic point mutations and indels in acute leukaemia. Hansen MC; Herborg LL; Hansen M; Roug AS; Hokland P Leuk Res; 2016 Dec; 51():27-31. PubMed ID: 27821287 [TBL] [Abstract][Full Text] [Related]
19. pyAmpli: an amplicon-based variant filter pipeline for targeted resequencing data. Beyens M; Boeckx N; Van Camp G; Op de Beeck K; Vandeweyer G BMC Bioinformatics; 2017 Dec; 18(1):554. PubMed ID: 29237398 [TBL] [Abstract][Full Text] [Related]
20. An introduction to high-throughput sequencing experiments: design and bioinformatics analysis. Normand R; Yanai I Methods Mol Biol; 2013; 1038():1-26. PubMed ID: 23872966 [TBL] [Abstract][Full Text] [Related] [Next] [New Search]