137 related articles for article (PubMed ID: 28475666)
1. Assembling draft genomes using contiBAIT.
O'Neill K; Hills M; Gottlieb M; Borkowski M; Karsan A; Lansdorp PM
Bioinformatics; 2017 Sep; 33(17):2737-2739. PubMed ID: 28475666
[TBL] [Abstract][Full Text] [Related]
2. ARCS: scaffolding genome drafts with linked reads.
Yeo S; Coombe L; Warren RL; Chu J; Birol I
Bioinformatics; 2018 Mar; 34(5):725-731. PubMed ID: 29069293
[TBL] [Abstract][Full Text] [Related]
3. Construction of Whole Genomes from Scaffolds Using Single Cell Strand-Seq Data.
Hills M; Falconer E; O'Neill K; Sanders AD; Howe K; Guryev V; Lansdorp PM
Int J Mol Sci; 2021 Mar; 22(7):. PubMed ID: 33807210
[TBL] [Abstract][Full Text] [Related]
4. SAGE2: parallel human genome assembly.
Molnar M; Haghshenas E; Ilie L
Bioinformatics; 2018 Feb; 34(4):678-680. PubMed ID: 29045591
[TBL] [Abstract][Full Text] [Related]
5. AlignGraph: algorithm for secondary de novo genome assembly guided by closely related references.
Bao E; Jiang T; Girke T
Bioinformatics; 2014 Jun; 30(12):i319-i328. PubMed ID: 24932000
[TBL] [Abstract][Full Text] [Related]
6. Mosdepth: quick coverage calculation for genomes and exomes.
Pedersen BS; Quinlan AR
Bioinformatics; 2018 Mar; 34(5):867-868. PubMed ID: 29096012
[TBL] [Abstract][Full Text] [Related]
7. HaploMerger2: rebuilding both haploid sub-assemblies from high-heterozygosity diploid genome assembly.
Huang S; Kang M; Xu A
Bioinformatics; 2017 Aug; 33(16):2577-2579. PubMed ID: 28407147
[TBL] [Abstract][Full Text] [Related]
8. GAPPadder: a sensitive approach for closing gaps on draft genomes with short sequence reads.
Chu C; Li X; Wu Y
BMC Genomics; 2019 Jun; 20(Suppl 5):426. PubMed ID: 31167639
[TBL] [Abstract][Full Text] [Related]
9. Ragout-a reference-assisted assembly tool for bacterial genomes.
Kolmogorov M; Raney B; Paten B; Pham S
Bioinformatics; 2014 Jun; 30(12):i302-9. PubMed ID: 24931998
[TBL] [Abstract][Full Text] [Related]
10. BFC: correcting Illumina sequencing errors.
Li H
Bioinformatics; 2015 Sep; 31(17):2885-7. PubMed ID: 25953801
[TBL] [Abstract][Full Text] [Related]
11. GRASS: a generic algorithm for scaffolding next-generation sequencing assemblies.
Gritsenko AA; Nijkamp JF; Reinders MJ; de Ridder D
Bioinformatics; 2012 Jun; 28(11):1429-37. PubMed ID: 22492642
[TBL] [Abstract][Full Text] [Related]
12. GapPredict - A Language Model for Resolving Gaps in Draft Genome Assemblies.
Chen E; Chu J; Zhang J; Warren RL; Birol I
IEEE/ACM Trans Comput Biol Bioinform; 2021; 18(6):2802-2808. PubMed ID: 34478378
[TBL] [Abstract][Full Text] [Related]
13. Discovery and genotyping of novel sequence insertions in many sequenced individuals.
Kavak P; Lin YY; Numanagic I; Asghari H; Güngör T; Alkan C; Hach F
Bioinformatics; 2017 Jul; 33(14):i161-i169. PubMed ID: 28881988
[TBL] [Abstract][Full Text] [Related]
14. SASpector: analysis of missing genomic regions in draft genomes of prokaryotes.
Lood C; Correa Rojo A; Sinar D; Verkinderen E; Lavigne R; Noort VV
Bioinformatics; 2022 May; 38(10):2920-2921. PubMed ID: 35561201
[TBL] [Abstract][Full Text] [Related]
15. Figbird: a probabilistic method for filling gaps in genome assemblies.
Tarafder S; Islam M; Shatabda S; Rahman A
Bioinformatics; 2022 Aug; 38(15):3717-3724. PubMed ID: 35731219
[TBL] [Abstract][Full Text] [Related]
16. ARBitR: an overlap-aware genome assembly scaffolder for linked reads.
Hiltunen M; Ryberg M; Johannesson H
Bioinformatics; 2021 Aug; 37(15):2203-2205. PubMed ID: 33216122
[TBL] [Abstract][Full Text] [Related]
17. Strand-seq enables reliable separation of long reads by chromosome via expectation maximization.
Ghareghani M; Porubskỳ D; Sanders AD; Meiers S; Eichler EE; Korbel JO; Marschall T
Bioinformatics; 2018 Jul; 34(13):i115-i123. PubMed ID: 29949971
[TBL] [Abstract][Full Text] [Related]
18. Sealer: a scalable gap-closing application for finishing draft genomes.
Paulino D; Warren RL; Vandervalk BP; Raymond A; Jackman SD; Birol I
BMC Bioinformatics; 2015 Jul; 16(1):230. PubMed ID: 26209068
[TBL] [Abstract][Full Text] [Related]
19. Telescoper: de novo assembly of highly repetitive regions.
Bresler M; Sheehan S; Chan AH; Song YS
Bioinformatics; 2012 Sep; 28(18):i311-i317. PubMed ID: 22962446
[TBL] [Abstract][Full Text] [Related]
20. A space and time-efficient index for the compacted colored de Bruijn graph.
Almodaresi F; Sarkar H; Srivastava A; Patro R
Bioinformatics; 2018 Jul; 34(13):i169-i177. PubMed ID: 29949982
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]
