BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

136 related articles for article (PubMed ID: 28475666)

  • 21. Integrating Hi-C links with assembly graphs for chromosome-scale assembly.
    Ghurye J; Rhie A; Walenz BP; Schmitt A; Selvaraj S; Pop M; Phillippy AM; Koren S
    PLoS Comput Biol; 2019 Aug; 15(8):e1007273. PubMed ID: 31433799
    [TBL] [Abstract][Full Text] [Related]  

  • 22. Long Range Sequencing and Validation of Insect Genome Assemblies.
    Saha S
    Methods Mol Biol; 2019; 1858():33-44. PubMed ID: 30414109
    [TBL] [Abstract][Full Text] [Related]  

  • 23. A spectral algorithm for fast de novo layout of uncorrected long nanopore reads.
    Recanati A; Brüls T; d'Aspremont A
    Bioinformatics; 2017 Oct; 33(20):3188-3194. PubMed ID: 28605450
    [TBL] [Abstract][Full Text] [Related]  

  • 24. FinisherSC: a repeat-aware tool for upgrading de novo assembly using long reads.
    Lam KK; LaButti K; Khalak A; Tse D
    Bioinformatics; 2015 Oct; 31(19):3207-9. PubMed ID: 26040454
    [TBL] [Abstract][Full Text] [Related]  

  • 25. CSAR: a contig scaffolding tool using algebraic rearrangements.
    Chen KT; Liu CL; Huang SH; Shen HT; Shieh YK; Chiu HT; Lu CL
    Bioinformatics; 2018 Jan; 34(1):109-111. PubMed ID: 28968788
    [TBL] [Abstract][Full Text] [Related]  

  • 26. ntJoin: Fast and lightweight assembly-guided scaffolding using minimizer graphs.
    Coombe L; Nikolić V; Chu J; Birol I; Warren RL
    Bioinformatics; 2020 Jun; 36(12):3885-3887. PubMed ID: 32311025
    [TBL] [Abstract][Full Text] [Related]  

  • 27. aTRAM - automated target restricted assembly method: a fast method for assembling loci across divergent taxa from next-generation sequencing data.
    Allen JM; Huang DI; Cronk QC; Johnson KP
    BMC Bioinformatics; 2015 Mar; 16(1):98. PubMed ID: 25887972
    [TBL] [Abstract][Full Text] [Related]  

  • 28. Kollector: transcript-informed, targeted de novo assembly of gene loci.
    Kucuk E; Chu J; Vandervalk BP; Hammond SA; Warren RL; Birol I
    Bioinformatics; 2017 Jun; 33(12):1782-1788. PubMed ID: 28186221
    [TBL] [Abstract][Full Text] [Related]  

  • 29. Unicycler: Resolving bacterial genome assemblies from short and long sequencing reads.
    Wick RR; Judd LM; Gorrie CL; Holt KE
    PLoS Comput Biol; 2017 Jun; 13(6):e1005595. PubMed ID: 28594827
    [TBL] [Abstract][Full Text] [Related]  

  • 30. scanPAV: a pipeline for extracting presence-absence variations in genome pairs.
    Giordano F; Stammnitz MR; Murchison EP; Ning Z
    Bioinformatics; 2018 Sep; 34(17):3022-3024. PubMed ID: 29608694
    [TBL] [Abstract][Full Text] [Related]  

  • 31. ReliableGenome: annotation of genomic regions with high/low variant calling concordance.
    Popitsch N; ; Schuh A; Taylor JC
    Bioinformatics; 2017 Jan; 33(2):155-160. PubMed ID: 27605105
    [TBL] [Abstract][Full Text] [Related]  

  • 32. High-quality draft assemblies of mammalian genomes from massively parallel sequence data.
    Gnerre S; Maccallum I; Przybylski D; Ribeiro FJ; Burton JN; Walker BJ; Sharpe T; Hall G; Shea TP; Sykes S; Berlin AM; Aird D; Costello M; Daza R; Williams L; Nicol R; Gnirke A; Nusbaum C; Lander ES; Jaffe DB
    Proc Natl Acad Sci U S A; 2011 Jan; 108(4):1513-8. PubMed ID: 21187386
    [TBL] [Abstract][Full Text] [Related]  

  • 33. ANAQUIN: a software toolkit for the analysis of spike-in controls for next generation sequencing.
    Wong T; Deveson IW; Hardwick SA; Mercer TR
    Bioinformatics; 2017 Jun; 33(11):1723-1724. PubMed ID: 28130232
    [TBL] [Abstract][Full Text] [Related]  

  • 34. SVmine improves structural variation detection by integrative mining of predictions from multiple algorithms.
    Xia Y; Liu Y; Deng M; Xi R
    Bioinformatics; 2017 Nov; 33(21):3348-3354. PubMed ID: 29036467
    [TBL] [Abstract][Full Text] [Related]  

  • 35. NeatFreq: reference-free data reduction and coverage normalization for De Novo sequence assembly.
    McCorrison JM; Venepally P; Singh I; Fouts DE; Lasken RS; Methé BA
    BMC Bioinformatics; 2014 Nov; 15(1):357. PubMed ID: 25407910
    [TBL] [Abstract][Full Text] [Related]  

  • 36. KAT: a K-mer analysis toolkit to quality control NGS datasets and genome assemblies.
    Mapleson D; Garcia Accinelli G; Kettleborough G; Wright J; Clavijo BJ
    Bioinformatics; 2017 Feb; 33(4):574-576. PubMed ID: 27797770
    [TBL] [Abstract][Full Text] [Related]  

  • 37. RepLong: de novo repeat identification using long read sequencing data.
    Guo R; Li YR; He S; Ou-Yang L; Sun Y; Zhu Z
    Bioinformatics; 2018 Apr; 34(7):1099-1107. PubMed ID: 29126180
    [TBL] [Abstract][Full Text] [Related]  

  • 38. Finishing bacterial genome assemblies with Mix.
    Soueidan H; Maurier F; Groppi A; Sirand-Pugnet P; Tardy F; Citti C; Dupuy V; Nikolski M
    BMC Bioinformatics; 2013; 14 Suppl 15(Suppl 15):S16. PubMed ID: 24564706
    [TBL] [Abstract][Full Text] [Related]  

  • 39. BAUM: improving genome assembly by adaptive unique mapping and local overlap-layout-consensus approach.
    Wang A; Wang Z; Li Z; Li LM
    Bioinformatics; 2018 Jun; 34(12):2019-2028. PubMed ID: 29346504
    [TBL] [Abstract][Full Text] [Related]  

  • 40. piPipes: a set of pipelines for piRNA and transposon analysis via small RNA-seq, RNA-seq, degradome- and CAGE-seq, ChIP-seq and genomic DNA sequencing.
    Han BW; Wang W; Zamore PD; Weng Z
    Bioinformatics; 2015 Feb; 31(4):593-5. PubMed ID: 25342065
    [TBL] [Abstract][Full Text] [Related]  

    [Previous]   [Next]    [New Search]
    of 7.