136 related articles for article (PubMed ID: 28475666)
41. FaStore: a space-saving solution for raw sequencing data.
Roguski L; Ochoa I; Hernaez M; Deorowicz S
Bioinformatics; 2018 Aug; 34(16):2748-2756. PubMed ID: 29617939
[TBL] [Abstract][Full Text] [Related]
42. RAPTR-SV: a hybrid method for the detection of structural variants.
Bickhart DM; Hutchison JL; Xu L; Schnabel RD; Taylor JF; Reecy JM; Schroeder S; Van Tassell CP; Sonstegard TS; Liu GE
Bioinformatics; 2015 Jul; 31(13):2084-90. PubMed ID: 25686638
[TBL] [Abstract][Full Text] [Related]
43. Simulating the dynamics of targeted capture sequencing with CapSim.
Cao MD; Ganesamoorthy D; Zhou C; Coin LJM
Bioinformatics; 2018 Mar; 34(5):873-874. PubMed ID: 29092025
[TBL] [Abstract][Full Text] [Related]
44. RecoverY: k-mer-based read classification for Y-chromosome-specific sequencing and assembly.
Rangavittal S; Harris RS; Cechova M; Tomaszkiewicz M; Chikhi R; Makova KD; Medvedev P
Bioinformatics; 2018 Apr; 34(7):1125-1131. PubMed ID: 29194476
[TBL] [Abstract][Full Text] [Related]
45. Semiconductor sequencing: how many flows do you need?
Budczies J; Bockmayr M; Treue D; Klauschen F; Denkert C
Bioinformatics; 2015 Apr; 31(8):1199-203. PubMed ID: 25480372
[TBL] [Abstract][Full Text] [Related]
46. Bandage: interactive visualization of de novo genome assemblies.
Wick RR; Schultz MB; Zobel J; Holt KE
Bioinformatics; 2015 Oct; 31(20):3350-2. PubMed ID: 26099265
[TBL] [Abstract][Full Text] [Related]
47. QuasR: quantification and annotation of short reads in R.
Gaidatzis D; Lerch A; Hahne F; Stadler MB
Bioinformatics; 2015 Apr; 31(7):1130-2. PubMed ID: 25417205
[TBL] [Abstract][Full Text] [Related]
48. CAMSA: a tool for comparative analysis and merging of scaffold assemblies.
Aganezov SS; Alekseyev MA
BMC Bioinformatics; 2017 Dec; 18(Suppl 15):496. PubMed ID: 29244014
[TBL] [Abstract][Full Text] [Related]
49. ACE: accurate correction of errors using K-mer tries.
Sheikhizadeh S; de Ridder D
Bioinformatics; 2015 Oct; 31(19):3216-8. PubMed ID: 26026137
[TBL] [Abstract][Full Text] [Related]
50. WGA-LP: a pipeline for whole genome assembly of contaminated reads.
Rossi N; Colautti A; Iacumin L; Piazza C
Bioinformatics; 2022 Jan; 38(3):846-848. PubMed ID: 34668528
[TBL] [Abstract][Full Text] [Related]
51. HiCLift: a fast and efficient tool for converting chromatin interaction data between genome assemblies.
Wang X; Yue F
Bioinformatics; 2023 Jun; 39(6):. PubMed ID: 37335863
[TBL] [Abstract][Full Text] [Related]
52. GMcloser: closing gaps in assemblies accurately with a likelihood-based selection of contig or long-read alignments.
Kosugi S; Hirakawa H; Tabata S
Bioinformatics; 2015 Dec; 31(23):3733-41. PubMed ID: 26261222
[TBL] [Abstract][Full Text] [Related]
53. Coverage-Versus-Length Plots, a Simple Quality Control Step for
Douglass AP; O'Brien CE; Offei B; Coughlan AY; Ortiz-Merino RA; Butler G; Byrne KP; Wolfe KH
G3 (Bethesda); 2019 Mar; 9(3):879-887. PubMed ID: 30674538
[TBL] [Abstract][Full Text] [Related]
54. Arioc: GPU-accelerated alignment of short bisulfite-treated reads.
Wilton R; Li X; Feinberg AP; Szalay AS
Bioinformatics; 2018 Aug; 34(15):2673-2675. PubMed ID: 29554207
[TBL] [Abstract][Full Text] [Related]
55. RGAAT: A Reference-based Genome Assembly and Annotation Tool for New Genomes and Upgrade of Known Genomes.
Liu W; Wu S; Lin Q; Gao S; Ding F; Zhang X; Aljohi HA; Yu J; Hu S
Genomics Proteomics Bioinformatics; 2018 Oct; 16(5):373-381. PubMed ID: 30583062
[TBL] [Abstract][Full Text] [Related]
56. High-speed and high-ratio referential genome compression.
Liu Y; Peng H; Wong L; Li J
Bioinformatics; 2017 Nov; 33(21):3364-3372. PubMed ID: 28651329
[TBL] [Abstract][Full Text] [Related]
57. h5vc: scalable nucleotide tallies with HDF5.
Pyl PT; Gehring J; Fischer B; Huber W
Bioinformatics; 2014 May; 30(10):1464-6. PubMed ID: 24451629
[TBL] [Abstract][Full Text] [Related]
58. SQUAT: a Sequencing Quality Assessment Tool for data quality assessments of genome assemblies.
Yang LA; Chang YJ; Chen SH; Lin CY; Ho JM
BMC Genomics; 2019 Apr; 19(Suppl 9):238. PubMed ID: 30999844
[TBL] [Abstract][Full Text] [Related]
59. PhylOligo: a package to identify contaminant or untargeted organism sequences in genome assemblies.
Mallet L; Bitard-Feildel T; Cerutti F; Chiapello H
Bioinformatics; 2017 Oct; 33(20):3283-3285. PubMed ID: 28637232
[TBL] [Abstract][Full Text] [Related]
60. Assembling short reads from jumping libraries with large insert sizes.
Vasilinetc I; Prjibelski AD; Gurevich A; Korobeynikov A; Pevzner PA
Bioinformatics; 2015 Oct; 31(20):3262-8. PubMed ID: 26040456
[TBL] [Abstract][Full Text] [Related]
[Previous] [Next] [New Search]
