342 related articles for article (PubMed ID: 28481982)
1. McPAS-TCR: a manually curated catalogue of pathology-associated T cell receptor sequences.
Tickotsky N; Sagiv T; Prilusky J; Shifrut E; Friedman N
Bioinformatics; 2017 Sep; 33(18):2924-2929. PubMed ID: 28481982
[TBL] [Abstract][Full Text] [Related]
2. VDJdb: a curated database of T-cell receptor sequences with known antigen specificity.
Shugay M; Bagaev DV; Zvyagin IV; Vroomans RM; Crawford JC; Dolton G; Komech EA; Sycheva AL; Koneva AE; Egorov ES; Eliseev AV; Van Dyk E; Dash P; Attaf M; Rius C; Ladell K; McLaren JE; Matthews KK; Clemens EB; Douek DC; Luciani F; van Baarle D; Kedzierska K; Kesmir C; Thomas PG; Price DA; Sewell AK; Chudakov DM
Nucleic Acids Res; 2018 Jan; 46(D1):D419-D427. PubMed ID: 28977646
[TBL] [Abstract][Full Text] [Related]
3. DIRMC: a database of immunotherapy-related molecular characteristics.
Liu Y; Zhou Y; Hu X; Le-Ge W; Wang H; Jiang T; Li J; Hu Y; Wang Y
Database (Oxford); 2024 May; 2024():. PubMed ID: 38713861
[TBL] [Abstract][Full Text] [Related]
4. VDJdb in 2019: database extension, new analysis infrastructure and a T-cell receptor motif compendium.
Bagaev DV; Vroomans RMA; Samir J; Stervbo U; Rius C; Dolton G; Greenshields-Watson A; Attaf M; Egorov ES; Zvyagin IV; Babel N; Cole DK; Godkin AJ; Sewell AK; Kesmir C; Chudakov DM; Luciani F; Shugay M
Nucleic Acids Res; 2020 Jan; 48(D1):D1057-D1062. PubMed ID: 31588507
[TBL] [Abstract][Full Text] [Related]
5. PIRD: Pan Immune Repertoire Database.
Zhang W; Wang L; Liu K; Wei X; Yang K; Du W; Wang S; Guo N; Ma C; Luo L; Wu J; Lin L; Yang F; Gao F; Wang X; Li T; Zhang R; Saksena NK; Yang H; Wang J; Fang L; Hou Y; Xu X; Liu X
Bioinformatics; 2020 Feb; 36(3):897-903. PubMed ID: 31373607
[TBL] [Abstract][Full Text] [Related]
6. A Framework for Annotation of Antigen Specificities in High-Throughput T-Cell Repertoire Sequencing Studies.
Pogorelyy MV; Shugay M
Front Immunol; 2019; 10():2159. PubMed ID: 31616409
[TBL] [Abstract][Full Text] [Related]
7. MPID-T: database for sequence-structure-function information on T-cell receptor/peptide/MHC interactions.
Tong JC; Kong L; Tan TW; Ranganathan S
Appl Bioinformatics; 2006; 5(2):111-4. PubMed ID: 16722775
[TBL] [Abstract][Full Text] [Related]
8. Tracking global changes induced in the CD4 T-cell receptor repertoire by immunization with a complex antigen using short stretches of CDR3 protein sequence.
Thomas N; Best K; Cinelli M; Reich-Zeliger S; Gal H; Shifrut E; Madi A; Friedman N; Shawe-Taylor J; Chain B
Bioinformatics; 2014 Nov; 30(22):3181-8. PubMed ID: 25095879
[TBL] [Abstract][Full Text] [Related]
9. High-throughput identification of antigen-specific TCRs by TCR gene capture.
Linnemann C; Heemskerk B; Kvistborg P; Kluin RJ; Bolotin DA; Chen X; Bresser K; Nieuwland M; Schotte R; Michels S; Gomez-Eerland R; Jahn L; Hombrink P; Legrand N; Shu CJ; Mamedov IZ; Velds A; Blank CU; Haanen JB; Turchaninova MA; Kerkhoven RM; Spits H; Hadrup SR; Heemskerk MH; Blankenstein T; Chudakov DM; Bendle GM; Schumacher TN
Nat Med; 2013 Nov; 19(11):1534-41. PubMed ID: 24121928
[TBL] [Abstract][Full Text] [Related]
10. High-throughput sequencing of CD4
Wang L; Zhang P; Li J; Lu H; Peng L; Ling J; Zhang X; Zeng X; Zhao Y; Zhang W
Arthritis Res Ther; 2019 Dec; 21(1):295. PubMed ID: 31856905
[TBL] [Abstract][Full Text] [Related]
11. Identifying and Tracking Low-Frequency Virus-Specific TCR Clonotypes Using High-Throughput Sequencing.
Wolf K; Hether T; Gilchuk P; Kumar A; Rajeh A; Schiebout C; Maybruck J; Buller RM; Ahn TH; Joyce S; DiPaolo RJ
Cell Rep; 2018 Nov; 25(9):2369-2378.e4. PubMed ID: 30485806
[TBL] [Abstract][Full Text] [Related]
12. epiTCR: a highly sensitive predictor for TCR-peptide binding.
Pham MN; Nguyen TN; Tran LS; Nguyen QB; Nguyen TH; Pham TMQ; Nguyen HN; Giang H; Phan MD; Nguyen V
Bioinformatics; 2023 May; 39(5):. PubMed ID: 37094220
[TBL] [Abstract][Full Text] [Related]
13. RTCR: a pipeline for complete and accurate recovery of T cell repertoires from high throughput sequencing data.
Gerritsen B; Pandit A; Andeweg AC; de Boer RJ
Bioinformatics; 2016 Oct; 32(20):3098-3106. PubMed ID: 27324198
[TBL] [Abstract][Full Text] [Related]
14. Distinctive properties of identical twins' TCR repertoires revealed by high-throughput sequencing.
Zvyagin IV; Pogorelyy MV; Ivanova ME; Komech EA; Shugay M; Bolotin DA; Shelenkov AA; Kurnosov AA; Staroverov DB; Chudakov DM; Lebedev YB; Mamedov IZ
Proc Natl Acad Sci U S A; 2014 Apr; 111(16):5980-5. PubMed ID: 24711416
[TBL] [Abstract][Full Text] [Related]
15. Ultra-efficient sequencing of T Cell receptor repertoires reveals shared responses in muscle from patients with Myositis.
Montagne JM; Zheng XA; Pinal-Fernandez I; Milisenda JC; Christopher-Stine L; Lloyd TE; Mammen AL; Larman HB
EBioMedicine; 2020 Sep; 59():102972. PubMed ID: 32891935
[TBL] [Abstract][Full Text] [Related]
16. Investigation of Antigen-Specific T-Cell Receptor Clusters in Human Cancers.
Zhang H; Liu L; Zhang J; Chen J; Ye J; Shukla S; Qiao J; Zhan X; Chen H; Wu CJ; Fu YX; Li B
Clin Cancer Res; 2020 Mar; 26(6):1359-1371. PubMed ID: 31831563
[TBL] [Abstract][Full Text] [Related]
17. Longitudinal analysis of T-cell receptor repertoires reveals persistence of antigen-driven CD4
Servaas NH; Zaaraoui-Boutahar F; Wichers CGK; Ottria A; Chouri E; Affandi AJ; Silva-Cardoso S; van der Kroef M; Carvalheiro T; van Wijk F; Radstake TRDJ; Andeweg AC; Pandit A
J Autoimmun; 2021 Feb; 117():102574. PubMed ID: 33307312
[TBL] [Abstract][Full Text] [Related]
18. Breast cancer is marked by specific, Public T-cell receptor CDR3 regions shared by mice and humans.
Gordin M; Philip H; Zilberberg A; Gidoni M; Margalit R; Clouser C; Adams K; Vigneault F; Cohen IR; Yaari G; Efroni S
PLoS Comput Biol; 2021 Jan; 17(1):e1008486. PubMed ID: 33465095
[TBL] [Abstract][Full Text] [Related]
19. TCR3d: The T cell receptor structural repertoire database.
Gowthaman R; Pierce BG
Bioinformatics; 2019 Dec; 35(24):5323-5325. PubMed ID: 31240309
[TBL] [Abstract][Full Text] [Related]
20. TCRdb: a comprehensive database for T-cell receptor sequences with powerful search function.
Chen SY; Yue T; Lei Q; Guo AY
Nucleic Acids Res; 2021 Jan; 49(D1):D468-D474. PubMed ID: 32990749
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]
