These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.


BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

148 related articles for article (PubMed ID: 28494947)

  • 1. AESOP: A Python Library for Investigating Electrostatics in Protein Interactions.
    Harrison RES; Mohan RR; Gorham RD; Kieslich CA; Morikis D
    Biophys J; 2017 May; 112(9):1761-1766. PubMed ID: 28494947
    [TBL] [Abstract][Full Text] [Related]  

  • 2. Electrostatic clustering and free energy calculations provide a foundation for protein design and optimization.
    Gorham RD; Kieslich CA; Morikis D
    Ann Biomed Eng; 2011 Apr; 39(4):1252-63. PubMed ID: 21140293
    [TBL] [Abstract][Full Text] [Related]  

  • 3. Automated computational framework for the analysis of electrostatic similarities of proteins.
    Kieslich CA; Morikis D; Yang J; Gunopulos D
    Biotechnol Prog; 2011; 27(2):316-25. PubMed ID: 21485028
    [TBL] [Abstract][Full Text] [Related]  

  • 4. PDB2PQR: an automated pipeline for the setup of Poisson-Boltzmann electrostatics calculations.
    Dolinsky TJ; Nielsen JE; McCammon JA; Baker NA
    Nucleic Acids Res; 2004 Jul; 32(Web Server issue):W665-7. PubMed ID: 15215472
    [TBL] [Abstract][Full Text] [Related]  

  • 5. Optimizing electrostatic field calculations with the adaptive Poisson-Boltzmann Solver to predict electric fields at protein-protein interfaces. I. Sampling and focusing.
    Ritchie AW; Webb LJ
    J Phys Chem B; 2013 Oct; 117(39):11473-89. PubMed ID: 24041016
    [TBL] [Abstract][Full Text] [Related]  

  • 6. Features of CPB: a Poisson-Boltzmann solver that uses an adaptive Cartesian grid.
    Fenley MO; Harris RC; Mackoy T; Boschitsch AH
    J Comput Chem; 2015 Feb; 36(4):235-43. PubMed ID: 25430617
    [TBL] [Abstract][Full Text] [Related]  

  • 7. Amino acid conformational preferences and solvation of polar backbone atoms in peptides and proteins.
    Avbelj F
    J Mol Biol; 2000 Jul; 300(5):1335-59. PubMed ID: 10903873
    [TBL] [Abstract][Full Text] [Related]  

  • 8. PCE: web tools to compute protein continuum electrostatics.
    Miteva MA; Tufféry P; Villoutreix BO
    Nucleic Acids Res; 2005 Jul; 33(Web Server issue):W372-5. PubMed ID: 15980492
    [TBL] [Abstract][Full Text] [Related]  

  • 9. Using DelPhi to compute electrostatic potentials and assess their contribution to interactions.
    Oron A; Wolfson H; Gunasekaran K; Nussinov R
    Curr Protoc Bioinformatics; 2003 Aug; Chapter 8():Unit 8.4. PubMed ID: 18428711
    [TBL] [Abstract][Full Text] [Related]  

  • 10. Web servers and services for electrostatics calculations with APBS and PDB2PQR.
    Unni S; Huang Y; Hanson RM; Tobias M; Krishnan S; Li WW; Nielsen JE; Baker NA
    J Comput Chem; 2011 May; 32(7):1488-91. PubMed ID: 21425296
    [TBL] [Abstract][Full Text] [Related]  

  • 11. The alpha helix dipole: screened out?
    Sengupta D; Behera RN; Smith JC; Ullmann GM
    Structure; 2005 Jun; 13(6):849-55. PubMed ID: 15939016
    [TBL] [Abstract][Full Text] [Related]  

  • 12. PBEQ-Solver for online visualization of electrostatic potential of biomolecules.
    Jo S; Vargyas M; Vasko-Szedlar J; Roux B; Im W
    Nucleic Acids Res; 2008 Jul; 36(Web Server issue):W270-5. PubMed ID: 18508808
    [TBL] [Abstract][Full Text] [Related]  

  • 13. Optimizing electrostatic field calculations with the Adaptive Poisson-Boltzmann Solver to predict electric fields at protein-protein interfaces II: explicit near-probe and hydrogen-bonding water molecules.
    Ritchie AW; Webb LJ
    J Phys Chem B; 2014 Jul; 118(28):7692-702. PubMed ID: 24446740
    [TBL] [Abstract][Full Text] [Related]  

  • 14. Electrostatics calculations: latest methodological advances.
    Koehl P
    Curr Opin Struct Biol; 2006 Apr; 16(2):142-51. PubMed ID: 16540310
    [TBL] [Abstract][Full Text] [Related]  

  • 15. pmx Webserver: A User Friendly Interface for Alchemistry.
    Gapsys V; de Groot BL
    J Chem Inf Model; 2017 Feb; 57(2):109-114. PubMed ID: 28181802
    [TBL] [Abstract][Full Text] [Related]  

  • 16. PB-AM: An open-source, fully analytical linear poisson-boltzmann solver.
    Felberg LE; Brookes DH; Yap EH; Jurrus E; Baker NA; Head-Gordon T
    J Comput Chem; 2017 Jun; 38(15):1275-1282. PubMed ID: 27804145
    [TBL] [Abstract][Full Text] [Related]  

  • 17. Electrostatics, structure prediction, and the energy landscapes for protein folding and binding.
    Tsai MY; Zheng W; Balamurugan D; Schafer NP; Kim BL; Cheung MS; Wolynes PG
    Protein Sci; 2016 Jan; 25(1):255-69. PubMed ID: 26183799
    [TBL] [Abstract][Full Text] [Related]  

  • 18. APBSmem: a graphical interface for electrostatic calculations at the membrane.
    Callenberg KM; Choudhary OP; de Forest GL; Gohara DW; Baker NA; Grabe M
    PLoS One; 2010 Sep; 5(9):. PubMed ID: 20949122
    [TBL] [Abstract][Full Text] [Related]  

  • 19. PDB2PQR: expanding and upgrading automated preparation of biomolecular structures for molecular simulations.
    Dolinsky TJ; Czodrowski P; Li H; Nielsen JE; Jensen JH; Klebe G; Baker NA
    Nucleic Acids Res; 2007 Jul; 35(Web Server issue):W522-5. PubMed ID: 17488841
    [TBL] [Abstract][Full Text] [Related]  

  • 20. Bluues: a program for the analysis of the electrostatic properties of proteins based on generalized Born radii.
    Fogolari F; Corazza A; Yarra V; Jalaru A; Viglino P; Esposito G
    BMC Bioinformatics; 2012 Mar; 13 Suppl 4(Suppl 4):S18. PubMed ID: 22536964
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 8.