These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.


BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

176 related articles for article (PubMed ID: 28501650)

  • 1. PROBer Provides a General Toolkit for Analyzing Sequencing-Based Toeprinting Assays.
    Li B; Tambe A; Aviran S; Pachter L
    Cell Syst; 2017 May; 4(5):568-574.e7. PubMed ID: 28501650
    [TBL] [Abstract][Full Text] [Related]  

  • 2. RNA Framework: an all-in-one toolkit for the analysis of RNA structures and post-transcriptional modifications.
    Incarnato D; Morandi E; Simon LM; Oliviero S
    Nucleic Acids Res; 2018 Sep; 46(16):e97. PubMed ID: 29893890
    [TBL] [Abstract][Full Text] [Related]  

  • 3. Robust statistical modeling improves sensitivity of high-throughput RNA structure probing experiments.
    Selega A; Sirocchi C; Iosub I; Granneman S; Sanguinetti G
    Nat Methods; 2017 Jan; 14(1):83-89. PubMed ID: 27819660
    [TBL] [Abstract][Full Text] [Related]  

  • 4. SPARTA: Simple Program for Automated reference-based bacterial RNA-seq Transcriptome Analysis.
    Johnson BK; Scholz MB; Teal TK; Abramovitch RB
    BMC Bioinformatics; 2016 Feb; 17():66. PubMed ID: 26847232
    [TBL] [Abstract][Full Text] [Related]  

  • 5. Transcript Profiling Using Long-Read Sequencing Technologies.
    Bayega A; Wang YC; Oikonomopoulos S; Djambazian H; Fahiminiya S; Ragoussis J
    Methods Mol Biol; 2018; 1783():121-147. PubMed ID: 29767360
    [TBL] [Abstract][Full Text] [Related]  

  • 6. Investigating Mitochondrial Transcriptomes and RNA Processing Using Circular RNA Sequencing.
    Kuznetsova I; Rackham O; Filipovska A
    Methods Mol Biol; 2021; 2192():43-57. PubMed ID: 33230764
    [TBL] [Abstract][Full Text] [Related]  

  • 7. Information transduction capacity reduces the uncertainties in annotation-free isoform discovery and quantification.
    Deng Y; Bao F; Yang Y; Ji X; Du M; Zhang Z; Wang M; Dai Q
    Nucleic Acids Res; 2017 Sep; 45(15):e143. PubMed ID: 28911101
    [TBL] [Abstract][Full Text] [Related]  

  • 8. Network-Based Isoform Quantification with RNA-Seq Data for Cancer Transcriptome Analysis.
    Zhang W; Chang JW; Lin L; Minn K; Wu B; Chien J; Yong J; Zheng H; Kuang R
    PLoS Comput Biol; 2015 Dec; 11(12):e1004465. PubMed ID: 26699225
    [TBL] [Abstract][Full Text] [Related]  

  • 9. RNA Post-Transcriptional Modification Mapping Data Analysis Using RNA Framework.
    Manfredonia I; Incarnato D
    Methods Mol Biol; 2021; 2298():3-13. PubMed ID: 34085235
    [TBL] [Abstract][Full Text] [Related]  

  • 10. Comprehensive assessment of mRNA isoform detection methods for long-read sequencing data.
    Su Y; Yu Z; Jin S; Ai Z; Yuan R; Chen X; Xue Z; Guo Y; Chen D; Liang H; Liu Z; Liu W
    Nat Commun; 2024 May; 15(1):3972. PubMed ID: 38730241
    [TBL] [Abstract][Full Text] [Related]  

  • 11. RNAEditor: easy detection of RNA editing events and the introduction of editing islands.
    John D; Weirick T; Dimmeler S; Uchida S
    Brief Bioinform; 2017 Nov; 18(6):993-1001. PubMed ID: 27694136
    [TBL] [Abstract][Full Text] [Related]  

  • 12. Joint estimation of isoform expression and isoform-specific read distribution using multisample RNA-Seq data.
    Suo C; Calza S; Salim A; Pawitan Y
    Bioinformatics; 2014 Feb; 30(4):506-13. PubMed ID: 24307704
    [TBL] [Abstract][Full Text] [Related]  

  • 13. StructureFold2: Bringing chemical probing data into the computational fold of RNA structural analysis.
    Tack DC; Tang Y; Ritchey LE; Assmann SM; Bevilacqua PC
    Methods; 2018 Jul; 143():12-15. PubMed ID: 29410279
    [TBL] [Abstract][Full Text] [Related]  

  • 14. CIDANE: comprehensive isoform discovery and abundance estimation.
    Canzar S; Andreotti S; Weese D; Reinert K; Klau GW
    Genome Biol; 2016 Jan; 17():16. PubMed ID: 26831908
    [TBL] [Abstract][Full Text] [Related]  

  • 15. Deep Computational Circular RNA Analytics from RNA-seq Data.
    Jakobi T; Dieterich C
    Methods Mol Biol; 2018; 1724():9-25. PubMed ID: 29322437
    [TBL] [Abstract][Full Text] [Related]  

  • 16. Polyester: simulating RNA-seq datasets with differential transcript expression.
    Frazee AC; Jaffe AE; Langmead B; Leek JT
    Bioinformatics; 2015 Sep; 31(17):2778-84. PubMed ID: 25926345
    [TBL] [Abstract][Full Text] [Related]  

  • 17. High Throughput Sequencing-Based Approaches for Gene Expression Analysis.
    Reddy RRS; Ramanujam MV
    Methods Mol Biol; 2018; 1783():299-323. PubMed ID: 29767369
    [TBL] [Abstract][Full Text] [Related]  

  • 18. In Silico Identification of RNA Modifications from High-Throughput Sequencing Data Using HAMR.
    Kuksa PP; Leung YY; Vandivier LE; Anderson Z; Gregory BD; Wang LS
    Methods Mol Biol; 2017; 1562():211-229. PubMed ID: 28349463
    [TBL] [Abstract][Full Text] [Related]  

  • 19. Methods for RNA Modification Mapping Using Deep Sequencing: Established and New Emerging Technologies.
    Motorin Y; Helm M
    Genes (Basel); 2019 Jan; 10(1):. PubMed ID: 30634534
    [TBL] [Abstract][Full Text] [Related]  

  • 20. Methods to Study Long Noncoding RNA Expression and Dynamics in Zebrafish Using RNA Sequencing.
    Mathew S; Sivadas A; Sehgal P; Kaushik K; Vellarikkal SK; Scaria V; Sivasubbu S
    Methods Mol Biol; 2019; 1912():77-110. PubMed ID: 30635891
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 9.