These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.


BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

225 related articles for article (PubMed ID: 28520713)

  • 1. Combining inferred regulatory and reconstructed metabolic networks enhances phenotype prediction in yeast.
    Wang Z; Danziger SA; Heavner BD; Ma S; Smith JJ; Li S; Herricks T; Simeonidis E; Baliga NS; Aitchison JD; Price ND
    PLoS Comput Biol; 2017 May; 13(5):e1005489. PubMed ID: 28520713
    [TBL] [Abstract][Full Text] [Related]  

  • 2. Probabilistic integrative modeling of genome-scale metabolic and regulatory networks in Escherichia coli and Mycobacterium tuberculosis.
    Chandrasekaran S; Price ND
    Proc Natl Acad Sci U S A; 2010 Oct; 107(41):17845-50. PubMed ID: 20876091
    [TBL] [Abstract][Full Text] [Related]  

  • 3. Gene expression network reconstruction by convex feature selection when incorporating genetic perturbations.
    Logsdon BA; Mezey J
    PLoS Comput Biol; 2010 Dec; 6(12):e1001014. PubMed ID: 21152011
    [TBL] [Abstract][Full Text] [Related]  

  • 4. Trade-off between responsiveness and noise suppression in biomolecular system responses to environmental cues.
    Ratushny AV; Shmulevich I; Aitchison JD
    PLoS Comput Biol; 2011 Jun; 7(6):e1002091. PubMed ID: 21738459
    [TBL] [Abstract][Full Text] [Related]  

  • 5. A Protocol for the Construction and Curation of Genome-Scale Integrated Metabolic and Regulatory Network Models.
    Chandrasekaran S
    Methods Mol Biol; 2019; 1927():203-214. PubMed ID: 30788794
    [TBL] [Abstract][Full Text] [Related]  

  • 6. Unraveling condition-dependent networks of transcription factors that control metabolic pathway activity in yeast.
    Fendt SM; Oliveira AP; Christen S; Picotti P; Dechant RC; Sauer U
    Mol Syst Biol; 2010 Nov; 6():432. PubMed ID: 21119627
    [TBL] [Abstract][Full Text] [Related]  

  • 7. A guide to integrating transcriptional regulatory and metabolic networks using PROM (probabilistic regulation of metabolism).
    Simeonidis E; Chandrasekaran S; Price ND
    Methods Mol Biol; 2013; 985():103-12. PubMed ID: 23417801
    [TBL] [Abstract][Full Text] [Related]  

  • 8. Integrated Modeling of Gene Regulatory and Metabolic Networks in Mycobacterium tuberculosis.
    Ma S; Minch KJ; Rustad TR; Hobbs S; Zhou SL; Sherman DR; Price ND
    PLoS Comput Biol; 2015 Nov; 11(11):e1004543. PubMed ID: 26618656
    [TBL] [Abstract][Full Text] [Related]  

  • 9. Metabolic constraint-based refinement of transcriptional regulatory networks.
    Chandrasekaran S; Price ND
    PLoS Comput Biol; 2013; 9(12):e1003370. PubMed ID: 24348226
    [TBL] [Abstract][Full Text] [Related]  

  • 10. Plasticity of genetic interactions in metabolic networks of yeast.
    Harrison R; Papp B; Pál C; Oliver SG; Delneri D
    Proc Natl Acad Sci U S A; 2007 Feb; 104(7):2307-12. PubMed ID: 17284612
    [TBL] [Abstract][Full Text] [Related]  

  • 11. Evaluating accessibility, usability and interoperability of genome-scale metabolic models for diverse yeasts species.
    Domenzain I; Li F; Kerkhoven EJ; Siewers V
    FEMS Yeast Res; 2021 Mar; 21(1):. PubMed ID: 33428734
    [TBL] [Abstract][Full Text] [Related]  

  • 12. Genetic buffering and potentiation in metabolism.
    Poyatos JF
    PLoS Comput Biol; 2020 Sep; 16(9):e1008185. PubMed ID: 32925942
    [TBL] [Abstract][Full Text] [Related]  

  • 13. OptRAM: In-silico strain design via integrative regulatory-metabolic network modeling.
    Shen F; Sun R; Yao J; Li J; Liu Q; Price ND; Liu C; Wang Z
    PLoS Comput Biol; 2019 Mar; 15(3):e1006835. PubMed ID: 30849073
    [TBL] [Abstract][Full Text] [Related]  

  • 14. An approach for reduction of false predictions in reverse engineering of gene regulatory networks.
    Khan A; Saha G; Pal RK
    J Theor Biol; 2018 May; 445():9-30. PubMed ID: 29462626
    [TBL] [Abstract][Full Text] [Related]  

  • 15. Integrating transcriptional and protein interaction networks to prioritize condition-specific master regulators.
    Padi M; Quackenbush J
    BMC Syst Biol; 2015 Nov; 9():80. PubMed ID: 26576632
    [TBL] [Abstract][Full Text] [Related]  

  • 16. Continuous modeling of metabolic networks with gene regulation in yeast and in vivo determination of rate parameters.
    Moisset P; Vaisman D; Cintolesi A; Urrutia J; Rapaport I; Andrews BA; Asenjo JA
    Biotechnol Bioeng; 2012 Sep; 109(9):2325-39. PubMed ID: 22447363
    [TBL] [Abstract][Full Text] [Related]  

  • 17. Functional Reconstitution of a Pyruvate Dehydrogenase in the Cytosol of Saccharomyces cerevisiae through Lipoylation Machinery Engineering.
    Lian J; Zhao H
    ACS Synth Biol; 2016 Jul; 5(7):689-97. PubMed ID: 26991359
    [TBL] [Abstract][Full Text] [Related]  

  • 18. ICON-GEMs: integration of co-expression network in genome-scale metabolic models, shedding light through systems biology.
    Paklao T; Suratanee A; Plaimas K
    BMC Bioinformatics; 2023 Dec; 24(1):492. PubMed ID: 38129786
    [TBL] [Abstract][Full Text] [Related]  

  • 19. Biological Network Inference and analysis using SEBINI and CABIN.
    Taylor R; Singhal M
    Methods Mol Biol; 2009; 541():551-76. PubMed ID: 19381531
    [TBL] [Abstract][Full Text] [Related]  

  • 20. Integrated analysis of regulatory and metabolic networks reveals novel regulatory mechanisms in Saccharomyces cerevisiae.
    Herrgård MJ; Lee BS; Portnoy V; Palsson BØ
    Genome Res; 2006 May; 16(5):627-35. PubMed ID: 16606697
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 12.