BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

746 related articles for article (PubMed ID: 28521017)

  • 1. CPC2: a fast and accurate coding potential calculator based on sequence intrinsic features.
    Kang YJ; Yang DC; Kong L; Hou M; Meng YQ; Wei L; Gao G
    Nucleic Acids Res; 2017 Jul; 45(W1):W12-W16. PubMed ID: 28521017
    [TBL] [Abstract][Full Text] [Related]  

  • 2. CNIT: a fast and accurate web tool for identifying protein-coding and long non-coding transcripts based on intrinsic sequence composition.
    Guo JC; Fang SS; Wu Y; Zhang JH; Chen Y; Liu J; Wu B; Wu JR; Li EM; Xu LY; Sun L; Zhao Y
    Nucleic Acids Res; 2019 Jul; 47(W1):W516-W522. PubMed ID: 31147700
    [TBL] [Abstract][Full Text] [Related]  

  • 3. BASiNET-BiologicAl Sequences NETwork: a case study on coding and non-coding RNAs identification.
    Ito EA; Katahira I; Vicente FFDR; Pereira LFP; Lopes FM
    Nucleic Acids Res; 2018 Sep; 46(16):e96. PubMed ID: 29873784
    [TBL] [Abstract][Full Text] [Related]  

  • 4. PARRoT- a homology-based strategy to quantify and compare RNA-sequencing from non-model organisms.
    Gan RC; Chen TW; Wu TH; Huang PJ; Lee CC; Yeh YM; Chiu CH; Huang HD; Tang P
    BMC Bioinformatics; 2016 Dec; 17(Suppl 19):513. PubMed ID: 28155708
    [TBL] [Abstract][Full Text] [Related]  

  • 5. Identification of protein coding regions in RNA transcripts.
    Tang S; Lomsadze A; Borodovsky M
    Nucleic Acids Res; 2015 Jul; 43(12):e78. PubMed ID: 25870408
    [TBL] [Abstract][Full Text] [Related]  

  • 6. Methods to Study Long Noncoding RNA Expression and Dynamics in Zebrafish Using RNA Sequencing.
    Mathew S; Sivadas A; Sehgal P; Kaushik K; Vellarikkal SK; Scaria V; Sivasubbu S
    Methods Mol Biol; 2019; 1912():77-110. PubMed ID: 30635891
    [TBL] [Abstract][Full Text] [Related]  

  • 7. De Novo Identification of sRNA Loci and Non-coding RNAs by High-Throughput Sequencing.
    Lunardon A; Forestan C; Farinati S; Varotto S
    Methods Mol Biol; 2018; 1675():297-314. PubMed ID: 29052198
    [TBL] [Abstract][Full Text] [Related]  

  • 8. ISRNA: an integrative online toolkit for short reads from high-throughput sequencing data.
    Luo GZ; Yang W; Ma YK; Wang XJ
    Bioinformatics; 2014 Feb; 30(3):434-6. PubMed ID: 24300438
    [TBL] [Abstract][Full Text] [Related]  

  • 9. smallWig: parallel compression of RNA-seq WIG files.
    Wang Z; Weissman T; Milenkovic O
    Bioinformatics; 2016 Jan; 32(2):173-80. PubMed ID: 26424856
    [TBL] [Abstract][Full Text] [Related]  

  • 10. Utilizing sequence intrinsic composition to classify protein-coding and long non-coding transcripts.
    Sun L; Luo H; Bu D; Zhao G; Yu K; Zhang C; Liu Y; Chen R; Zhao Y
    Nucleic Acids Res; 2013 Sep; 41(17):e166. PubMed ID: 23892401
    [TBL] [Abstract][Full Text] [Related]  

  • 11. iSeq: Web-Based RNA-seq Data Analysis and Visualization.
    Zhang C; Fan C; Gan J; Zhu P; Kong L; Li C
    Methods Mol Biol; 2018; 1754():167-181. PubMed ID: 29536443
    [TBL] [Abstract][Full Text] [Related]  

  • 12. deepBase v2.0: identification, expression, evolution and function of small RNAs, LncRNAs and circular RNAs from deep-sequencing data.
    Zheng LL; Li JH; Wu J; Sun WJ; Liu S; Wang ZL; Zhou H; Yang JH; Qu LH
    Nucleic Acids Res; 2016 Jan; 44(D1):D196-202. PubMed ID: 26590255
    [TBL] [Abstract][Full Text] [Related]  

  • 13. StarScan: a web server for scanning small RNA targets from degradome sequencing data.
    Liu S; Li JH; Wu J; Zhou KR; Zhou H; Yang JH; Qu LH
    Nucleic Acids Res; 2015 Jul; 43(W1):W480-6. PubMed ID: 25990732
    [TBL] [Abstract][Full Text] [Related]  

  • 14. CPC: assess the protein-coding potential of transcripts using sequence features and support vector machine.
    Kong L; Zhang Y; Ye ZQ; Liu XQ; Zhao SQ; Wei L; Gao G
    Nucleic Acids Res; 2007 Jul; 35(Web Server issue):W345-9. PubMed ID: 17631615
    [TBL] [Abstract][Full Text] [Related]  

  • 15. CANEapp: a user-friendly application for automated next generation transcriptomic data analysis.
    Velmeshev D; Lally P; Magistri M; Faghihi MA
    BMC Genomics; 2016 Jan; 17():49. PubMed ID: 26758513
    [TBL] [Abstract][Full Text] [Related]  

  • 16. TrawlerWeb: an online de novo motif discovery tool for next-generation sequencing datasets.
    Dang LT; Tondl M; Chiu MHH; Revote J; Paten B; Tano V; Tokolyi A; Besse F; Quaife-Ryan G; Cumming H; Drvodelic MJ; Eichenlaub MP; Hallab JC; Stolper JS; Rossello FJ; Bogoyevitch MA; Jans DA; Nim HT; Porrello ER; Hudson JE; Ramialison M
    BMC Genomics; 2018 Apr; 19(1):238. PubMed ID: 29621972
    [TBL] [Abstract][Full Text] [Related]  

  • 17. CPSS: a computational platform for the analysis of small RNA deep sequencing data.
    Zhang Y; Xu B; Yang Y; Ban R; Zhang H; Jiang X; Cooke HJ; Xue Y; Shi Q
    Bioinformatics; 2012 Jul; 28(14):1925-7. PubMed ID: 22576177
    [TBL] [Abstract][Full Text] [Related]  

  • 18. CIDANE: comprehensive isoform discovery and abundance estimation.
    Canzar S; Andreotti S; Weese D; Reinert K; Klau GW
    Genome Biol; 2016 Jan; 17():16. PubMed ID: 26831908
    [TBL] [Abstract][Full Text] [Related]  

  • 19. CPPred: coding potential prediction based on the global description of RNA sequence.
    Tong X; Liu S
    Nucleic Acids Res; 2019 May; 47(8):e43. PubMed ID: 30753596
    [TBL] [Abstract][Full Text] [Related]  

  • 20. TERIUS: accurate prediction of lncRNA via high-throughput sequencing data representing RNA-binding protein association.
    Choi SW; Nam JW
    BMC Bioinformatics; 2018 Feb; 19(Suppl 1):41. PubMed ID: 29504902
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 38.