313 related articles for article (PubMed ID: 28529717)
1. Gene length and detection bias in single cell RNA sequencing protocols.
Phipson B; Zappia L; Oshlack A
F1000Res; 2017; 6():595. PubMed ID: 28529717
[No Abstract] [Full Text] [Related]
2. Detecting differential alternative splicing events in scRNA-seq with or without Unique Molecular Identifiers.
Hu Y; Wang K; Li M
PLoS Comput Biol; 2020 Jun; 16(6):e1007925. PubMed ID: 32502143
[TBL] [Abstract][Full Text] [Related]
3. Full-Length Single-Cell RNA-Sequencing with FLASH-seq.
Hahaut V; Picelli S
Methods Mol Biol; 2023; 2584():123-164. PubMed ID: 36495447
[TBL] [Abstract][Full Text] [Related]
4. Quantile normalization of single-cell RNA-seq read counts without unique molecular identifiers.
Townes FW; Irizarry RA
Genome Biol; 2020 Jul; 21(1):160. PubMed ID: 32620142
[TBL] [Abstract][Full Text] [Related]
5. zUMIs - A fast and flexible pipeline to process RNA sequencing data with UMIs.
Parekh S; Ziegenhain C; Vieth B; Enard W; Hellmann I
Gigascience; 2018 Jun; 7(6):. PubMed ID: 29846586
[TBL] [Abstract][Full Text] [Related]
6. Elimination of PCR duplicates in RNA-seq and small RNA-seq using unique molecular identifiers.
Fu Y; Wu PH; Beane T; Zamore PD; Weng Z
BMC Genomics; 2018 Jul; 19(1):531. PubMed ID: 30001700
[TBL] [Abstract][Full Text] [Related]
7. Unambiguous detection of SARS-CoV-2 subgenomic mRNAs with single-cell RNA sequencing.
Cohen P; DeGrace EJ; Danziger O; Patel RS; Barrall EA; Bobrowski T; Kehrer T; Cupic A; Miorin L; García-Sastre A; Rosenberg BR
Microbiol Spectr; 2023 Sep; 11(5):e0077623. PubMed ID: 37676044
[TBL] [Abstract][Full Text] [Related]
8. The impact of amplification on differential expression analyses by RNA-seq.
Parekh S; Ziegenhain C; Vieth B; Enard W; Hellmann I
Sci Rep; 2016 May; 6():25533. PubMed ID: 27156886
[TBL] [Abstract][Full Text] [Related]
9. Je, a versatile suite to handle multiplexed NGS libraries with unique molecular identifiers.
Girardot C; Scholtalbers J; Sauer S; Su SY; Furlong EE
BMC Bioinformatics; 2016 Oct; 17(1):419. PubMed ID: 27717304
[TBL] [Abstract][Full Text] [Related]
10. Statistical methods for analysis of single-cell RNA-sequencing data.
Das S; Rai SN
MethodsX; 2021; 8():101580. PubMed ID: 35004214
[TBL] [Abstract][Full Text] [Related]
11. A machine learning framework for scRNA-seq UMI threshold optimization and accurate classification of cell types.
Bishara I; Chen J; Griffiths JI; Bild AH; Nath A
Front Genet; 2022; 13():982019. PubMed ID: 36506328
[TBL] [Abstract][Full Text] [Related]
12. A multitask clustering approach for single-cell RNA-seq analysis in Recessive Dystrophic Epidermolysis Bullosa.
Zhang H; Lee CAA; Li Z; Garbe JR; Eide CR; Petegrosso R; Kuang R; Tolar J
PLoS Comput Biol; 2018 Apr; 14(4):e1006053. PubMed ID: 29630593
[TBL] [Abstract][Full Text] [Related]
13. CRISPR/Cas9-based depletion of 16S ribosomal RNA improves library complexity of single-cell RNA-sequencing in planarians.
Wang KT; Adler CE
BMC Genomics; 2023 Oct; 24(1):625. PubMed ID: 37864134
[TBL] [Abstract][Full Text] [Related]
14. Batch effects and the effective design of single-cell gene expression studies.
Tung PY; Blischak JD; Hsiao CJ; Knowles DA; Burnett JE; Pritchard JK; Gilad Y
Sci Rep; 2017 Jan; 7():39921. PubMed ID: 28045081
[TBL] [Abstract][Full Text] [Related]
15. Detection of high variability in gene expression from single-cell RNA-seq profiling.
Chen HI; Jin Y; Huang Y; Chen Y
BMC Genomics; 2016 Aug; 17 Suppl 7(Suppl 7):508. PubMed ID: 27556924
[TBL] [Abstract][Full Text] [Related]
16. Cell-level somatic mutation detection from single-cell RNA sequencing.
Vu TN; Nguyen HN; Calza S; Kalari KR; Wang L; Pawitan Y
Bioinformatics; 2019 Nov; 35(22):4679-4687. PubMed ID: 31028395
[TBL] [Abstract][Full Text] [Related]
17. Detecting cell-type-specific allelic expression imbalance by integrative analysis of bulk and single-cell RNA sequencing data.
Fan J; Wang X; Xiao R; Li M
PLoS Genet; 2021 Mar; 17(3):e1009080. PubMed ID: 33661921
[TBL] [Abstract][Full Text] [Related]
18. BUTTERFLY: addressing the pooled amplification paradox with unique molecular identifiers in single-cell RNA-seq.
Gustafsson J; Robinson J; Nielsen J; Pachter L
Genome Biol; 2021 Jun; 22(1):174. PubMed ID: 34103073
[TBL] [Abstract][Full Text] [Related]
19. Hydrop enables droplet-based single-cell ATAC-seq and single-cell RNA-seq using dissolvable hydrogel beads.
De Rop FV; Ismail JN; Bravo González-Blas C; Hulselmans GJ; Flerin CC; Janssens J; Theunis K; Christiaens VM; Wouters J; Marcassa G; de Wit J; Poovathingal S; Aerts S
Elife; 2022 Feb; 11():. PubMed ID: 35195064
[TBL] [Abstract][Full Text] [Related]
20. Improved Bacterial Single-Cell RNA-Seq through Automated MATQ-Seq and Cas9-Based Removal of rRNA Reads.
Homberger C; Hayward RJ; Barquist L; Vogel J
mBio; 2023 Apr; 14(2):e0355722. PubMed ID: 36880749
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]