These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.


BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

170 related articles for article (PubMed ID: 28531296)

  • 1. A new computational method to predict transcriptional activity of a DNA sequence from diverse datasets of massively parallel reporter assays.
    Liu Y; Irie T; Yada T; Suzuki Y
    Nucleic Acids Res; 2017 Jul; 45(13):e124. PubMed ID: 28531296
    [TBL] [Abstract][Full Text] [Related]  

  • 2. Deciphering regulatory DNA sequences and noncoding genetic variants using neural network models of massively parallel reporter assays.
    Movva R; Greenside P; Marinov GK; Nair S; Shrikumar A; Kundaje A
    PLoS One; 2019; 14(6):e0218073. PubMed ID: 31206543
    [TBL] [Abstract][Full Text] [Related]  

  • 3. Decoding enhancers using massively parallel reporter assays.
    Inoue F; Ahituv N
    Genomics; 2015 Sep; 106(3):159-164. PubMed ID: 26072433
    [TBL] [Abstract][Full Text] [Related]  

  • 4. A genome-integrated massively parallel reporter assay reveals DNA sequence determinants of cis-regulatory activity in neural cells.
    Maricque BB; Dougherty JD; Cohen BA
    Nucleic Acids Res; 2017 Feb; 45(4):e16. PubMed ID: 28204611
    [TBL] [Abstract][Full Text] [Related]  

  • 5. Meta-analysis of massively parallel reporter assays enables prediction of regulatory function across cell types.
    Kreimer A; Yan Z; Ahituv N; Yosef N
    Hum Mutat; 2019 Sep; 40(9):1299-1313. PubMed ID: 31131957
    [TBL] [Abstract][Full Text] [Related]  

  • 6. A systematic evaluation of the design and context dependencies of massively parallel reporter assays.
    Klein JC; Agarwal V; Inoue F; Keith A; Martin B; Kircher M; Ahituv N; Shendure J
    Nat Methods; 2020 Nov; 17(11):1083-1091. PubMed ID: 33046894
    [TBL] [Abstract][Full Text] [Related]  

  • 7. Combining TSS-MPRA and sensitive TSS profile dissimilarity scoring to study the sequence determinants of transcription initiation.
    Guzman C; Duttke S; Zhu Y; De Arruda Saldanha C; Downes NL; Benner C; Heinz S
    Nucleic Acids Res; 2023 Aug; 51(15):e80. PubMed ID: 37403796
    [TBL] [Abstract][Full Text] [Related]  

  • 8. Mapping DNA sequence to transcription factor binding energy in vivo.
    Barnes SL; Belliveau NM; Ireland WT; Kinney JB; Phillips R
    PLoS Comput Biol; 2019 Feb; 15(2):e1006226. PubMed ID: 30716072
    [TBL] [Abstract][Full Text] [Related]  

  • 9. Design and Analysis of Massively Parallel Reporter Assays Using FORECAST.
    Gilliot PA; Gorochowski TE
    Methods Mol Biol; 2023; 2553():41-56. PubMed ID: 36227538
    [TBL] [Abstract][Full Text] [Related]  

  • 10. Systematic dissection and optimization of inducible enhancers in human cells using a massively parallel reporter assay.
    Melnikov A; Murugan A; Zhang X; Tesileanu T; Wang L; Rogov P; Feizi S; Gnirke A; Callan CG; Kinney JB; Kellis M; Lander ES; Mikkelsen TS
    Nat Biotechnol; 2012 Feb; 30(3):271-7. PubMed ID: 22371084
    [TBL] [Abstract][Full Text] [Related]  

  • 11. Sequence-based correction of barcode bias in massively parallel reporter assays.
    Lee D; Kapoor A; Lee C; Mudgett M; Beer MA; Chakravarti A
    Genome Res; 2021 Sep; 31(9):1638-1645. PubMed ID: 34285053
    [TBL] [Abstract][Full Text] [Related]  

  • 12. Massively parallel reporter assays in cultured mammalian cells.
    Melnikov A; Zhang X; Rogov P; Wang L; Mikkelsen TS
    J Vis Exp; 2014 Aug; (90):. PubMed ID: 25177895
    [TBL] [Abstract][Full Text] [Related]  

  • 13. Synthetic STARR-seq reveals how DNA shape and sequence modulate transcriptional output and noise.
    Schöne S; Bothe M; Einfeldt E; Borschiwer M; Benner P; Vingron M; Thomas-Chollier M; Meijsing SH
    PLoS Genet; 2018 Nov; 14(11):e1007793. PubMed ID: 30427832
    [TBL] [Abstract][Full Text] [Related]  

  • 14. Characterization of the human p11 promoter sequence.
    Huang X; Pawliczak R; Yao XL; Madara P; Alsaaty S; Shelhamer JH; Cowan MJ
    Gene; 2003 May; 310():133-42. PubMed ID: 12801640
    [TBL] [Abstract][Full Text] [Related]  

  • 15. Integration of multiple epigenomic marks improves prediction of variant impact in saturation mutagenesis reporter assay.
    Shigaki D; Adato O; Adhikari AN; Dong S; Hawkins-Hooker A; Inoue F; Juven-Gershon T; Kenlay H; Martin B; Patra A; Penzar DD; Schubach M; Xiong C; Yan Z; Boyle AP; Kreimer A; Kulakovskiy IV; Reid J; Unger R; Yosef N; Shendure J; Ahituv N; Kircher M; Beer MA
    Hum Mutat; 2019 Sep; 40(9):1280-1291. PubMed ID: 31106481
    [TBL] [Abstract][Full Text] [Related]  

  • 16. MPRAnalyze: statistical framework for massively parallel reporter assays.
    Ashuach T; Fischer DS; Kreimer A; Ahituv N; Theis FJ; Yosef N
    Genome Biol; 2019 Sep; 20(1):183. PubMed ID: 31477158
    [TBL] [Abstract][Full Text] [Related]  

  • 17. Sequence features that drive human promoter function and tissue specificity.
    Landolin JM; Johnson DS; Trinklein ND; Aldred SF; Medina C; Shulha H; Weng Z; Myers RM
    Genome Res; 2010 Jul; 20(7):890-8. PubMed ID: 20501695
    [TBL] [Abstract][Full Text] [Related]  

  • 18. Functional dissection of IME1 transcription using quantitative promoter-reporter screening.
    Kahana S; Pnueli L; Kainth P; Sassi HE; Andrews B; Kassir Y
    Genetics; 2010 Nov; 186(3):829-41. PubMed ID: 20739709
    [TBL] [Abstract][Full Text] [Related]  

  • 19. Linear regression models predicting strength of transcriptional activity of promoters.
    Yada T; Yoshida K; Morita M; Taniguchi T; Irie T; Suzuki Y
    Genome Inform; 2011; 25(1):53-60. PubMed ID: 22230939
    [TBL] [Abstract][Full Text] [Related]  

  • 20. Sequence determinants of human gene regulatory elements.
    Sahu B; Hartonen T; Pihlajamaa P; Wei B; Dave K; Zhu F; Kaasinen E; Lidschreiber K; Lidschreiber M; Daub CO; Cramer P; Kivioja T; Taipale J
    Nat Genet; 2022 Mar; 54(3):283-294. PubMed ID: 35190730
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 9.