These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.


BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

97 related articles for article (PubMed ID: 28541905)

  • 1. Inferring Gene-Species Assignments in the Presence of Horizontal Gene Transfer.
    Mykowiecka A; Szczesny P; Gorecki P
    IEEE/ACM Trans Comput Biol Bioinform; 2018; 15(5):1571-1578. PubMed ID: 28541905
    [TBL] [Abstract][Full Text] [Related]  

  • 2. Exact Algorithms for Duplication-Transfer-Loss Reconciliation with Non-Binary Gene Trees.
    Kordi M; Bansal MS
    IEEE/ACM Trans Comput Biol Bioinform; 2019; 16(4):1077-1090. PubMed ID: 28622673
    [TBL] [Abstract][Full Text] [Related]  

  • 3. Confounding factors in HGT detection: statistical error, coalescent effects, and multiple solutions.
    Than C; Ruths D; Innan H; Nakhleh L
    J Comput Biol; 2007 May; 14(4):517-35. PubMed ID: 17572027
    [TBL] [Abstract][Full Text] [Related]  

  • 4. On the Complexity of Duplication-Transfer-Loss Reconciliation with Non-Binary Gene Trees.
    Kordi M; Bansal MS
    IEEE/ACM Trans Comput Biol Bioinform; 2017; 14(3):587-599. PubMed ID: 28055898
    [TBL] [Abstract][Full Text] [Related]  

  • 5. Horizontal gene transfer in an acid mine drainage microbial community.
    Guo J; Wang Q; Wang X; Wang F; Yao J; Zhu H
    BMC Genomics; 2015 Jul; 16(1):496. PubMed ID: 26141154
    [TBL] [Abstract][Full Text] [Related]  

  • 6. Reconciliation revisited: handling multiple optima when reconciling with duplication, transfer, and loss.
    Bansal MS; Alm EJ; Kellis M
    J Comput Biol; 2013 Oct; 20(10):738-54. PubMed ID: 24033262
    [TBL] [Abstract][Full Text] [Related]  

  • 7. Systematic inference of highways of horizontal gene transfer in prokaryotes.
    Bansal MS; Banay G; Harlow TJ; Gogarten JP; Shamir R
    Bioinformatics; 2013 Mar; 29(5):571-9. PubMed ID: 23335015
    [TBL] [Abstract][Full Text] [Related]  

  • 8. The NET-HMM approach: phylogenetic network inference by combining maximum likelihood and Hidden Markov Models.
    Snir S; Tuller T
    J Bioinform Comput Biol; 2009 Aug; 7(4):625-44. PubMed ID: 19634195
    [TBL] [Abstract][Full Text] [Related]  

  • 9. The net of life: reconstructing the microbial phylogenetic network.
    Kunin V; Goldovsky L; Darzentas N; Ouzounis CA
    Genome Res; 2005 Jul; 15(7):954-9. PubMed ID: 15965028
    [TBL] [Abstract][Full Text] [Related]  

  • 10. Minimizing the deep coalescence cost.
    Dąbkowski D; Tabaszewski P; Górecki P
    J Bioinform Comput Biol; 2018 Oct; 16(5):1840021. PubMed ID: 30419782
    [TBL] [Abstract][Full Text] [Related]  

  • 11. Multiple Optimal Reconciliations Under the Duplication-Loss-Coalescence Model.
    Du H; Ong YS; Knittel M; Mawhorter R; Liu N; Gross G; Tojo R; Libeskind-Hadas R; Wu YC
    IEEE/ACM Trans Comput Biol Bioinform; 2021; 18(6):2144-2156. PubMed ID: 31199267
    [TBL] [Abstract][Full Text] [Related]  

  • 12. Inferring incomplete lineage sorting, duplications, transfers and losses with reconciliations.
    Chan YB; Ranwez V; Scornavacca C
    J Theor Biol; 2017 Nov; 432():1-13. PubMed ID: 28801222
    [TBL] [Abstract][Full Text] [Related]  

  • 13. Probabilistic inference of lateral gene transfer events.
    Khan MA; Mahmudi O; Ullah I; Arvestad L; Lagergren J
    BMC Bioinformatics; 2016 Nov; 17(Suppl 14):431. PubMed ID: 28185583
    [TBL] [Abstract][Full Text] [Related]  

  • 14. Detecting lateral gene transfers by statistical reconciliation of phylogenetic forests.
    Abby SS; Tannier E; Gouy M; Daubin V
    BMC Bioinformatics; 2010 Jun; 11():324. PubMed ID: 20550700
    [TBL] [Abstract][Full Text] [Related]  

  • 15. Efficient algorithms for the reconciliation problem with gene duplication, horizontal transfer and loss.
    Bansal MS; Alm EJ; Kellis M
    Bioinformatics; 2012 Jun; 28(12):i283-91. PubMed ID: 22689773
    [TBL] [Abstract][Full Text] [Related]  

  • 16. On the impact of uncertain gene tree rooting on duplication-transfer-loss reconciliation.
    Kundu S; Bansal MS
    BMC Bioinformatics; 2018 Aug; 19(Suppl 9):290. PubMed ID: 30367593
    [TBL] [Abstract][Full Text] [Related]  

  • 17. A new fast method for inferring multiple consensus trees using k-medoids.
    Tahiri N; Willems M; Makarenkov V
    BMC Evol Biol; 2018 Apr; 18(1):48. PubMed ID: 29621975
    [TBL] [Abstract][Full Text] [Related]  

  • 18. Inferring phylogenetic networks by the maximum parsimony criterion: a case study.
    Jin G; Nakhleh L; Snir S; Tuller T
    Mol Biol Evol; 2007 Jan; 24(1):324-37. PubMed ID: 17068107
    [TBL] [Abstract][Full Text] [Related]  

  • 19. LEMON: a method to construct the local strains at horizontal gene transfer sites in gut metagenomics.
    Li C; Jiang Y; Li S
    BMC Bioinformatics; 2019 Dec; 20(Suppl 23):702. PubMed ID: 31881904
    [TBL] [Abstract][Full Text] [Related]  

  • 20. Detecting highways of horizontal gene transfer.
    Bansal MS; Banay G; Gogarten JP; Shamir R
    J Comput Biol; 2011 Sep; 18(9):1087-114. PubMed ID: 21899418
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 5.